ChromothripsisDB: a curated database of chromothripsis
 
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  Study
PubMed ID   27732578 Publish Date   2016 Oct
Journal   Nature Species   Homo sapiens
Disease Type   Pancreatic cancer Technology   Next Generation Sequencing
Case Number   72 Raw Data  
Title   A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
Authors   Notta F, Chan-Seng-Yue M, Lemire M, Li Y, Wilson GW, Connor AA, Denroche RE, Liang SB, Brown AM, Kim JC, Wang T, Simpson JT, Beck T, Borgida A, Buchner N, Chadwick D, Hafezi-Bakhtiari S, Dick JE, Heisler L, Hollingsworth MA, Ibrahimov E, Jang GH, Johns J, Jorgensen LG, Law C, Ludkovski O, Lungu I, Ng K, Pasternack D, Petersen GM, Shlush LI, Timms L, Tsao MS, Wilson JM, Yung CK, Zogopoulos G, Bartlett JM, Alexandrov LB, Real FX, Cleary SP, Roehrl MH, McPherson JD, Stein LD, Hudson TJ, Campbell PJ, Gallinger S
Affiliation   Ontario Institute for Cancer Research, Toronto, Ontario M5G 0A3, Canada
Chromothripsis Definition   Close-by breakpoints: >=14
Copy number states: >2
Fragments random joining: Yes
Download   Study Data File
 
Chromothripsis Cases
  Ashpc_0003
     
  Case ID: Ashpc_0003
  Chromosome:9
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0005
     
  Case ID: Ashpc_0005
  Chromosome:9,17,18,22
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Affected Gene: Gene List
  Ashpc_0006
     
  Case ID: Ashpc_0006
  Chromosome:6,10
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0007
     
  Case ID: Ashpc_0007
  Chromosome:4
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0008
     
  Case ID: Ashpc_0008
  Chromosome:3,14,18,20
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0009
     
  Case ID: Ashpc_0009
  Chromosome:14
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0010
     
  Case ID: Ashpc_0010
  Chromosome:6,22
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0016
     
  Case ID: Ashpc_0016
  Chromosome:9,13
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0017
     
  Case ID: Ashpc_0017
  Chromosome:12,17,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0022
     
  Case ID: Ashpc_0022
  Chromosome:19
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0025
     
  Case ID: Ashpc_0025
  Chromosome:17
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0026
     
  Case ID: Ashpc_0026
  Chromosome:17,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Ashpc_0027
     
  Case ID: Ashpc_0027
  Chromosome:6,8,12,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Affected Gene: Gene List
  Pcsi_0015
     
  Case ID: Pcsi_0015
  Chromosome:4,7,8,10,12,18,21
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0044
     
  Case ID: Pcsi_0044
  Chromosome:12,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0072
     
  Case ID: Pcsi_0072
  Chromosome:18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0077
     
  Case ID: Pcsi_0077
  Chromosome:9
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0080
     
  Case ID: Pcsi_0080
  Chromosome:1,14,15,18,20
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0081
     
  Case ID: Pcsi_0081
  Chromosome:4,5,6,8,10,14,15,20,22
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0082
     
  Case ID: Pcsi_0082
  Chromosome:8,13,15,16,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0085
     
  Case ID: Pcsi_0085
  Chromosome:12
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0101
     
  Case ID: Pcsi_0101
  Chromosome:7,11,14,15,16,22
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0104
     
  Case ID: Pcsi_0104
  Chromosome:1
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0105
     
  Case ID: Pcsi_0105
  Chromosome:3
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0109
     
  Case ID: Pcsi_0109
  Chromosome:7,12
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0111
     
  Case ID: Pcsi_0111
  Chromosome:1,3,6,8,17
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0132
     
  Case ID: Pcsi_0132
  Chromosome:10,12,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0145
     
  Case ID: Pcsi_0145
  Chromosome:8,14,18,19
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0162
     
  Case ID: Pcsi_0162
  Chromosome:16
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0170
     
  Case ID: Pcsi_0170
  Chromosome:19
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0171
     
  Case ID: Pcsi_0171
  Chromosome:9,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Affected Gene: Gene List
  Pcsi_0174
     
  Case ID: Pcsi_0174
  Chromosome:11
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0175
     
  Case ID: Pcsi_0175
  Chromosome:3,11,13
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0210
     
  Case ID: Pcsi_0210
  Chromosome:3,8,17,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0217
     
  Case ID: Pcsi_0217
  Chromosome:6,10,12
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0226
     
  Case ID: Pcsi_0226
  Chromosome:12
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0228
     
  Case ID: Pcsi_0228
  Chromosome:6
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0230
     
  Case ID: Pcsi_0230
  Chromosome:6,7,8,12,15,18,21
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0236
     
  Case ID: Pcsi_0236
  Chromosome:1,4,8
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0237
     
  Case ID: Pcsi_0237
  Chromosome:2,5,6,21,X
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0239
     
  Case ID: Pcsi_0239
  Chromosome:13
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0240
     
  Case ID: Pcsi_0240
  Chromosome:18,21
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0261
     
  Case ID: Pcsi_0261
  Chromosome:4,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0268
     
  Case ID: Pcsi_0268
  Chromosome:1,3,11
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0274
     
  Case ID: Pcsi_0274
  Chromosome:4,14,16,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0279
     
  Case ID: Pcsi_0279
  Chromosome:19,22
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0287
     
  Case ID: Pcsi_0287
  Chromosome:6,9,11
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0290
     
  Case ID: Pcsi_0290
  Chromosome:3,4,9,12,18,20
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Affected Gene: Gene List
  Pcsi_0297
     
  Case ID: Pcsi_0297
  Chromosome:1,6,9,11,12,15,17
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0300
     
  Case ID: Pcsi_0300
  Chromosome:7,12
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0303
     
  Case ID: Pcsi_0303
  Chromosome:14,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0305
     
  Case ID: Pcsi_0305
  Chromosome:2,5,11
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0307
     
  Case ID: Pcsi_0307
  Chromosome:6
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0324
     
  Case ID: Pcsi_0324
  Chromosome:1,5
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0325
     
  Case ID: Pcsi_0325
  Chromosome:3,7,8,11,12,18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0326
     
  Case ID: Pcsi_0326
  Chromosome:13
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0328
     
  Case ID: Pcsi_0328
  Chromosome:1
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0341
     
  Case ID: Pcsi_0341
  Chromosome:9
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0345
     
  Case ID: Pcsi_0345
  Chromosome:1
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0347
     
  Case ID: Pcsi_0347
  Chromosome:1,15
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0356
     
  Case ID: Pcsi_0356
  Chromosome:2,6,11,12,17,18,20,21
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Affected Gene: Gene List
  Pcsi_0387
     
  Case ID: Pcsi_0387
  Chromosome:11,16
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0407
     
  Case ID: Pcsi_0407
  Chromosome:14
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0410
     
  Case ID: Pcsi_0410
  Chromosome:6,8
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Affected Gene: Gene List
  Pcsi_0467
     
  Case ID: Pcsi_0467
  Chromosome:3
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0468
     
  Case ID: Pcsi_0468
  Chromosome:9
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0469
     
  Case ID: Pcsi_0469
  Chromosome:14,21
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0473
     
  Case ID: Pcsi_0473
  Chromosome:6
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0504
     
  Case ID: Pcsi_0504
  Chromosome:4,8,11
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0549
     
  Case ID: Pcsi_0549
  Chromosome:1,7,21
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  Pcsi_0572
     
  Case ID: Pcsi_0572
  Chromosome:1,2,14,19
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
  RAMP_0003
     
  Case ID: RAMP_0003
  Chromosome:2,4
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2500
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Chromothripsis database. 2025 Cai Laboratory