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  DMRs of TCGA_PCPG  
 
Chromosome:  
  There are totally 99 DMRs found in chromosome 1.
Note: For small series(<30 samples), M-values are transformed into beta-values.Download table		  
 
Chr Gene Start End Control Avg Tumor Avg Delta Beta Fold P Value UCSC
1 ZNF691 43316598 43317673 0.83138 0.93961 0.10823 1.13018 <0.000001 UCSC
1 ZBTB40 22611975 22612307 0.57444 0.77227 0.19784 1.3444 <0.000001 UCSC
1 VWA5B1 20617189 20617715 0.54283 0.33312 -0.20972 0.61366 0.000118 UCSC
1 VPS13D 12537859 12539023 0.6209 0.33181 -0.28909 0.5344 0.000006 UCSC
1 UBL4B 110654828 110655354 0.70471 0.85595 0.15123 1.2146 <0.000001 UCSC
1 TRAF5 211499555 211499713 0.42266 0.75041 0.32775 1.77543 <0.000001 UCSC
1 TP73 3634787 3634998 0.3413 0.61364 0.27233 1.79792 <0.000001 UCSC
1 TNRC4 151688940 151690173 0.19112 0.09774 -0.09338 0.5114 <0.000001 UCSC
1 TNR 175354730 175355844 0.78267 0.9122 0.12953 1.1655 <0.000001 UCSC
1 TNFSF4 173176099 173176629 0.18094 0.57049 0.38955 3.15287 <0.000001 UCSC
1 TMEM201 9663723 9665290 0.8445 0.3913 -0.4532 0.46335 <0.000001 UCSC
1 TDRD10 154519577 154523579 0.76675 0.40912 -0.35763 0.53357 <0.000001 UCSC
1 TAS1R1 6639664 6639836 0.09072 0.04646 -0.04426 0.51211 <0.000001 UCSC
1 SSBP3 54867662 54869456 0.71902 0.38828 -0.33074 0.54001 <0.000001 UCSC
1 SORT1 109940978 109941183 0.30902 0.1757 -0.13332 0.56856 <0.000001 UCSC
1 SNORA16A 28907402 28907890 0.08051 0.03949 -0.04102 0.49051 <0.000001 UCSC
1 SKI 2174243 2175377 0.73155 0.43975 -0.2918 0.60113 <0.000001 UCSC
1 SKI 2162540 2164369 0.34715 0.16778 -0.17938 0.48329 <0.000001 UCSC
1 SKI 2230450 2230819 0.65248 0.36739 -0.28509 0.56306 <0.000001 UCSC
1 SHC1 154941612 154945294 0.27062 0.14123 -0.12939 0.52188 <0.000001 UCSC
1 SEC22B 145090721 145094340 0.25404 0.12615 -0.12789 0.49658 0.000025 UCSC
1 SCNN1D 1225879 1227673 0.51048 0.32472 -0.18576 0.63611 0.000036 UCSC
1 SCNM1 151137158 151137492 0.46983 0.22968 -0.24015 0.48886 <0.000001 UCSC
1 RUSC1 155291103 155291466 0.44198 0.12154 -0.32043 0.275 <0.000001 UCSC
1 RUNX3 25291902 25292188 0.58215 0.73192 0.14977 1.25726 <0.000001 UCSC
1 RUNX3 25257537 25258265 0.35938 0.18792 -0.17146 0.5229 <0.000001 UCSC
1 No Gene 244094785 244095019 0.51102 0.27955 -0.23147 0.54704 0.000001 UCSC
1 RGS8 182641773 182642299 0.6141 0.8215 0.2074 1.33773 0.000136 UCSC
1 RCAN3 24861798 24861946 0.62911 0.86839 0.23928 1.38035 <0.000001 UCSC
1 RASSF5 206729402 206729836 0.30631 0.81583 0.50952 2.66339 <0.000001 UCSC
1 PTGS2 186649469 186649580 0.09437 0.04369 -0.05068 0.46293 <0.000001 UCSC
1 PROX1 214169430 214170723 0.80867 0.90572 0.09705 1.12001 0.001220 UCSC
1 PROX1 214152543 214152971 0.6042 0.7889 0.1847 1.3057 <0.000001 UCSC
1 PRKCZ 2005409 2005644 0.68312 0.31241 -0.37072 0.45732 <0.000001 UCSC
1 PRKCZ 2007468 2009476 0.84315 0.93291 0.08976 1.10646 <0.000001 UCSC
1 PRDM16 3114412 3116442 0.701 0.56457 -0.13643 0.80538 0.042569 UCSC
1 PLEKHG5 6579652 6580178 0.55935 0.30074 -0.25861 0.53766 <0.000001 UCSC
1 PIN1P1 70033508 70033711 0.07476 0.04827 -0.02649 0.64564 <0.000001 UCSC
1 PER3 7842203 7842572 0.6032 0.78045 0.17725 1.29386 <0.000001 UCSC
1 PBX1 164768402 164769572 0.89875 0.94904 0.05029 1.05596 <0.000001 UCSC
1 OLFM3 102462369 102462945 0.17787 0.14338 -0.03449 0.80609 0.000441 UCSC
1 NUP210L 154125951 154130042 0.76166 0.57299 -0.18867 0.75229 0.000221 UCSC
1 NTNG1 107678950 107682478 0.40721 0.57687 0.16967 1.41666 <0.000001 UCSC
1 NPHP4 5945846 5946863 0.89451 0.51109 -0.38341 0.57137 0.000003 UCSC
1 NMNAT2 183385810 183386112 0.29501 0.16006 -0.13495 0.54257 <0.000001 UCSC
1 NAV1 201776775 201777739 0.80693 0.74173 -0.0652 0.9192 0.001093 UCSC
1 MTMR11 149907831 149909044 0.26823 0.24365 -0.02458 0.90836 <0.000001 UCSC
1 MORN1 2324140 2324289 0.37468 0.20495 -0.16973 0.547 <0.000001 UCSC
1 MIR4689 5916790 5919669 0.85321 0.7316 -0.12161 0.85747 <0.000001 UCSC
1 MIR34A 9223027 9225352 0.16951 0.57013 0.40062 3.36348 <0.000001 UCSC
1 MIR29B2 207976620 207978844 0.79148 0.4567 -0.33479 0.57701 <0.000001 UCSC
1 MIR205 209526515 209528557 0.40428 0.18079 -0.22349 0.44719 <0.000001 UCSC
1 MANEAL 38260837 38261343 0.30237 0.12626 -0.17611 0.41757 <0.000001 UCSC
1 LOC148696 207991921 207993030 0.52442 0.34208 -0.18234 0.6523 0.000292 UCSC
1 LOC100130417 846615 850373 0.44079 0.58949 0.1487 1.33735 <0.000001 UCSC
1 LINC01132 234907250 234909490 0.35677 0.60475 0.24798 1.69508 0.000018 UCSC
1 LAX1 203734077 203735041 0.53634 0.47598 -0.06035 0.88747 0.002676 UCSC
1 KCND3 112437839 112439228 0.70755 0.44409 -0.26346 0.62765 0.000082 UCSC
1 HMGCL 24152463 24152720 0.63231 0.87164 0.23933 1.3785 <0.000001 UCSC
1 HLX 221050900 221051354 0.64718 0.37512 -0.27206 0.57963 <0.000001 UCSC
1 HLX 221057478 221057653 0.61789 0.33256 -0.28532 0.53823 <0.000001 UCSC
1 HLX 221055639 221055799 0.60787 0.33206 -0.27581 0.54627 <0.000001 UCSC
1 HLX 221068564 221068896 0.54915 0.25243 -0.29671 0.45968 <0.000001 UCSC
1 GJC2 228337195 228337889 0.56716 0.28196 -0.2852 0.49715 <0.000001 UCSC
1 GALNT2 230249483 230250838 0.6304 0.82957 0.19917 1.31594 <0.000001 UCSC
1 FLJ39609 854686 854846 0.72682 0.90671 0.17989 1.2475 <0.000001 UCSC
1 FAM78B 166039272 166040400 0.58907 0.82248 0.23341 1.39625 <0.000001 UCSC
1 ESRRG 216896589 216897126 0.09271 0.06081 -0.0319 0.65594 0.000006 UCSC
1 ERI3 44715476 44716778 0.82928 0.48303 -0.34625 0.58247 0.000002 UCSC
1 ELAVL4 50571334 50572425 0.65754 0.3477 -0.30984 0.52879 <0.000001 UCSC
1 ELAVL4 50573488 50574865 0.54201 0.34149 -0.20052 0.63004 0.000057 UCSC
1 DNAJC6 65775045 65775205 0.06472 0.03996 -0.02477 0.61734 <0.000001 UCSC
1 DNAJC6 65730360 65730615 0.09956 0.0557 -0.04386 0.55945 <0.000001 UCSC
1 DHRS3 12608729 12611080 0.3631 0.58224 0.21914 1.60351 0.000617 UCSC
1 DHDDS 26797391 26797804 0.51784 0.23442 -0.28343 0.45268 <0.000001 UCSC
1 CSMD2 34630716 34630924 0.11816 0.05482 -0.06334 0.46394 <0.000001 UCSC
1 COL9A2 40769589 40769824 0.67737 0.41732 -0.26004 0.6161 <0.000001 UCSC
1 CNR2 24229454 24229803 0.16607 0.10707 -0.059 0.64474 0.000076 UCSC
1 CHD5 6190924 6193018 0.61018 0.77833 0.16815 1.27557 <0.000001 UCSC
1 CELA2A 15782976 15783995 0.74093 0.88247 0.14154 1.19103 <0.000001 UCSC
1 CASZ1 10738087 10739251 0.79879 0.45029 -0.34849 0.56372 0.000004 UCSC
1 CAMTA1 7710237 7711561 0.74719 0.85323 0.10604 1.14192 0.000065 UCSC
1 CAMTA1 7691839 7692849 0.57571 0.82386 0.24816 1.43105 <0.000001 UCSC
1 CAMTA1 7318423 7319730 0.77888 0.88943 0.11055 1.14193 <0.000001 UCSC
1 CAMTA1 7307609 7308848 0.56411 0.74751 0.18339 1.3251 0.000079 UCSC
1 C1orf127 10895866 10896088 0.17356 0.47157 0.29801 2.717 0.000030 UCSC
1 C1orf106 200862664 200865950 0.79115 0.54876 -0.24239 0.69362 0.000004 UCSC
1 BEND5 49224343 49225377 0.82126 0.92967 0.10841 1.132 <0.000001 UCSC
1 BCL9 147012672 147012904 0.10783 0.0534 -0.05443 0.49519 <0.000001 UCSC
1 ATP2B4 203598523 203598673 0.07734 0.0302 -0.04714 0.39044 <0.000001 UCSC
1 ATF3 212688750 212689163 0.54986 0.23238 -0.31748 0.42262 <0.000001 UCSC
1 ARHGEF10L 17845732 17847791 0.36509 0.59865 0.23356 1.63973 <0.000001 UCSC
1 AMPD2 110165666 110168531 0.68694 0.33741 -0.34953 0.49118 <0.000001 UCSC
1 AHDC1 27876875 27879306 0.74385 0.86751 0.12366 1.16625 0.001322 UCSC
1 AGBL4 50489523 50489640 0.07535 0.0423 -0.03305 0.56135 <0.000001 UCSC
1 ADAR 154581746 154585032 0.57235 0.76451 0.19217 1.33575 <0.000001 UCSC
1 ACTRT2 2828114 2828282 0.68172 0.36602 -0.3157 0.5369 <0.000001 UCSC
1 ACOT7 6445150 6446354 0.75758 0.51761 -0.23997 0.68324 <0.000001 UCSC
1 ACAP3 1237539 1240156 0.71778 0.46093 -0.25685 0.64216 <0.000001 UCSC
 
 
© 2017 Cai Laboratory.  Last updated on 30 December 2017