MethCNA:
a database for integrating genomic and epigenomic data in cancer
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Sample ID
Examples:
GSM1194479
(Pancreatic adenocarcinoma) ;
GSM1588742
(Melanomas)
Click
here
to download a list of all tumor samples.
Visualization options:
Signal value for genomic gains >=
Color for genomic gains:
red
yellow
violet
green
blue
Signal value for genomic losses <=
Color for genomic losses:
red
yellow
violet
green
blue
Call for hypermethylation, delta beta >=
Color for hypermethylation:
red
yellow
violet
green
blue
Call for hypomethylation, delta beta <=
Color for hypomethylation:
red
yellow
violet
green
blue
Gene symbol(optional):
Gene
Examples:
F2RL3
gene promoter in GSE66836 (Lung adenocarcinoma) ;
GPER
promoter in GSE60185, GSE66313 and GSE69118 (Breast invasive carcinoma)
Cancer type:
Acute myeloid leukemia
Adrenocortical carcinoma
Atypical teratoid rhabdoid tumor
Bladder urothelial carcinoma
Breast invasive carcinoma
Cervical cancer
Cholangiocarcinoma
Colon adenocarcinoma
Diffuse intrinsic pontine glioma
Esophageal carcinoma
Glioblastoma multiforme
Head and neck squamous cell carcinoma
Kidney Chromophobe
Kidney renal clear cell carcinoma
Kidney renal papillary cell carcinoma
Liver hepatocellular carcinoma
Lung adenocarcinoma
Lung squamous cell carcinoma
Medulloblastoma
Neuroblastoma
Oligodendroglioma
Ovarian adenocarcinoma
Pancreatic adenocarcinoma
Pheochromocytoma and Paraganglioma
Prostate adenocarcinoma
Rectum adenocarcinoma
Sarcoma
Schwannoma
Skin cutaneous melanoma
Small cell lung carcinoma
Squamous cell skin carcinoma
Stomach adenocarcinoma
Thymoma
Thyroid carcinoma
Uterine carcinosarcoma
Uterine corpus endometrial carcinoma
Uveal melanoma
Series:
GSE38240
GSE47915
GSE49149
GSE54939
GSE56596
GSE60185
GSE60274
GSE61160
GSE61441
GSE62053
GSE62929
GSE63409
GSE63669
GSE65183
GSE65306
GSE65820
GSE66295
GSE66313
GSE66836
GSE67097
GSE68060
GSE69118
GSE70460
GSE72021
GSE75153
GSE75546
GSE77353
GSE77954
GSE79695
GSE81224
TCGA_ACC
TCGA_BLCA
TCGA_BRCA
TCGA_CESC
TCGA_CHOL
TCGA_COAD
TCGA_ESCA
TCGA_GBM
TCGA_HNSC
TCGA_KICH
TCGA_KIRC
TCGA_KIRP
TCGA_LIHC
TCGA_LUAD
TCGA_LUSC
TCGA_OV
TCGA_PAAD
TCGA_PCPG
TCGA_PRAD
TCGA_READ
TCGA_SARC
TCGA_SKCM
TCGA_STAD
TCGA_THCA
TCGA_THYM
TCGA_UCEC
TCGA_UCS
TCGA_UVM
Gene symbols:
(delimit by ";")
Region:
Promoter
TSS1500
TSS200
3'UTR
5'UTR
1stExon
Body
Island
Shore
Shelf
Open sea
Click
here
to get the gene list
Signal value for genomic gains >=
Signal value for genomic losses <=
Method to evaluate methylation level:
Maximum
Average
Median
Minimum
© 2017 Cai Laboratory. Last updated on 30 December 2017