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  DMRs of TCGA_UVM  
 
Chromosome:  
  There are totally 171 DMRs found in chromosome 1.
Note: For small series(<30 samples), M-values are transformed into beta-values.Download table		  
 
Chr Gene Start End Control Avg Tumor Avg Delta Beta Fold P Value UCSC
1 LOC284661 4472041 4472113 0.92552 0.38447 -0.54105 0.41541 0.000528 UCSC
1 PRDM16 3206484 3208475 0.92211 0.19181 -0.7303 0.20801 <0.000001 UCSC
1 ERI3 44726769 44727781 0.91268 0.94805 0.03536 1.03875 0.000096 UCSC
1 SSU72 1496855 1497013 0.90737 0.3304 -0.57697 0.36413 <0.000001 UCSC
1 C4BPB 207262170 207262686 0.89815 0.94909 0.05095 1.05673 <0.000001 UCSC
1 NPL 182760272 182763538 0.88446 0.93807 0.05361 1.06062 0.000113 UCSC
1 DUSP27 167063766 167063992 0.87106 0.94989 0.07883 1.0905 <0.000001 UCSC
1 PGBD5 230455630 230460272 0.86904 0.92922 0.06018 1.06925 0.000003 UCSC
1 PRKCZ 2042128 2045486 0.85523 0.92243 0.0672 1.07857 0.001327 UCSC
1 ACOT11 55088714 55089840 0.84171 0.53818 -0.30353 0.63939 0.005487 UCSC
1 CLCA2 86888472 86888742 0.82287 0.90967 0.0868 1.10549 <0.000001 UCSC
1 RCC2 17751452 17752491 0.81948 0.87883 0.05935 1.07243 0.000493 UCSC
1 SLC1A7 53555302 53557076 0.81686 0.89413 0.07727 1.09459 0.000007 UCSC
1 ARHGEF10L 17997106 17998133 0.81392 0.88616 0.07224 1.08876 <0.000001 UCSC
1 TRNAU1AP 28904686 28906662 0.80161 0.34936 -0.45225 0.43582 <0.000001 UCSC
1 RIT1 155881624 155885626 0.79508 0.89251 0.09743 1.12254 <0.000001 UCSC
1 ACTRT2 2837890 2840135 0.78874 0.51283 -0.27591 0.65019 0.000451 UCSC
1 GALNT2 230249497 230250824 0.78852 0.18696 -0.60156 0.2371 <0.000001 UCSC
1 WDR8 3559420 3559845 0.78751 0.93086 0.14335 1.18203 <0.000001 UCSC
1 C1orf113 36771717 36771857 0.7846 0.175 -0.60959 0.22305 <0.000001 UCSC
1 APITD1 10509928 10510967 0.78031 0.88112 0.10081 1.1292 <0.000001 UCSC
1 PVRL4 161059069 161059585 0.77422 0.87425 0.10003 1.1292 0.000017 UCSC
1 ACTRT2 2886709 2886951 0.77287 0.91741 0.14454 1.18701 <0.000001 UCSC
1 NHLH1 160336373 160336703 0.77063 0.8774 0.10677 1.13855 <0.000001 UCSC
1 SLC45A1 8403483 8403828 0.7683 0.15077 -0.61752 0.19624 <0.000001 UCSC
1 PEX10 2345269 2345474 0.76596 0.22274 -0.54322 0.2908 <0.000001 UCSC
1 CDC7 92012572 92012900 0.76572 0.94038 0.17466 1.2281 <0.000001 UCSC
1 ID3 23876793 23880287 0.76073 0.91486 0.15413 1.20261 <0.000001 UCSC
1 FAM20B 178991041 178994535 0.75885 0.87018 0.11133 1.1467 <0.000001 UCSC
1 OBSCN 228394376 228397731 0.75525 0.49374 -0.26151 0.65374 0.000019 UCSC
1 CTSK 150780302 150784304 0.7521 0.26178 -0.49032 0.34807 <0.000001 UCSC
1 ACTRT2 2798664 2800832 0.73928 0.48225 -0.25702 0.65233 0.000275 UCSC
1 CCT3 156304769 156306612 0.73699 0.12427 -0.61272 0.16862 <0.000001 UCSC
1 NFASC 204965532 204966703 0.73363 0.92107 0.18744 1.2555 <0.000001 UCSC
1 SSU72 1486181 1488332 0.73049 0.23535 -0.49514 0.32218 <0.000001 UCSC
1 RAP1GAP 21965842 21966968 0.7276 0.89129 0.16369 1.22497 <0.000001 UCSC
1 LBR 225610975 225614241 0.72498 0.92771 0.20272 1.27963 <0.000001 UCSC
1 HLX 221057479 221057652 0.72324 0.92058 0.19734 1.27285 <0.000001 UCSC
1 C1orf61 156392284 156396360 0.71263 0.86652 0.15389 1.21595 <0.000001 UCSC
1 SKI 2232390 2232606 0.71209 0.16036 -0.55172 0.2252 <0.000001 UCSC
1 GALE 24125899 24126166 0.71044 0.13203 -0.57841 0.18584 <0.000001 UCSC
1 MIR4689 5916851 5918830 0.70868 0.89742 0.18874 1.26633 0.003498 UCSC
1 LOC115110 2483251 2484254 0.70604 0.95101 0.24496 1.34695 <0.000001 UCSC
1 RNF2 185010473 185013967 0.70246 0.89596 0.1935 1.27546 <0.000001 UCSC
1 CSRP1 201476542 201476683 0.70199 0.20309 -0.4989 0.28931 <0.000001 UCSC
1 SLC45A3 205631973 205632131 0.69558 0.84544 0.14985 1.21543 <0.000001 UCSC
1 DESI2 244805081 244807249 0.6932 0.88282 0.18962 1.27355 <0.000001 UCSC
1 PRDM16 3099456 3101384 0.6922 0.84852 0.15631 1.22582 <0.000001 UCSC
1 NPHP4 5955461 5957472 0.68489 0.90451 0.21961 1.32066 <0.000001 UCSC
1 TMEM201 9665731 9668292 0.68367 0.87203 0.18836 1.27552 <0.000001 UCSC
1 MTMR11 149902293 149904202 0.67381 0.92492 0.25111 1.37268 <0.000001 UCSC
1 MAP3K6 27693718 27693904 0.67257 0.25853 -0.41404 0.3844 <0.000001 UCSC
1 PARK7 8044085 8045459 0.67031 0.92983 0.25952 1.38716 <0.000001 UCSC
1 PRDM16 3070589 3070885 0.66893 0.9017 0.23277 1.34798 <0.000001 UCSC
1 CABC1 227172511 227177078 0.66813 0.85667 0.18853 1.28218 <0.000001 UCSC
1 PRDM16 3041198 3043197 0.66808 0.93844 0.27036 1.40469 <0.000001 UCSC
1 ODF2L 86861029 86861350 0.65755 0.26537 -0.39219 0.40357 0.000002 UCSC
1 C1orf170 917616 917687 0.6574 0.26982 -0.38757 0.41044 0.000001 UCSC
1 PSMB2 36108142 36108297 0.65588 0.23903 -0.41685 0.36444 <0.000001 UCSC
1 GREM2 240776049 240776324 0.65146 0.91268 0.26122 1.40097 <0.000001 UCSC
1 NUP210L 154125951 154130042 0.64891 0.28218 -0.36673 0.43485 <0.000001 UCSC
1 PRDM16 3073566 3073862 0.64308 0.88246 0.23937 1.37223 <0.000001 UCSC
1 NPPA 11907945 11908277 0.64261 0.82845 0.18584 1.28919 <0.000001 UCSC
1 PRDM16 3143078 3145597 0.64037 0.48388 -0.15649 0.75563 <0.000001 UCSC
1 NAV1 201776426 201778099 0.64034 0.90175 0.26141 1.40823 <0.000001 UCSC
1 SPSB1 9400434 9401033 0.63742 0.8829 0.24548 1.38512 <0.000001 UCSC
1 SKI 2190831 2192126 0.63717 0.91342 0.27624 1.43354 <0.000001 UCSC
1 IL23R 67600008 67600475 0.63676 0.85331 0.21654 1.34007 <0.000001 UCSC
1 TTLL10 1118616 1122618 0.63412 0.91226 0.27814 1.43863 <0.000001 UCSC
1 PRDM16 3127707 3129074 0.62765 0.92539 0.29774 1.47438 <0.000001 UCSC
1 MTOR 11181581 11182621 0.62718 0.92988 0.3027 1.48264 <0.000001 UCSC
1 TNFRSF25 6525970 6526152 0.62598 0.22636 -0.39961 0.36162 <0.000001 UCSC
1 PRDM16 3164311 3164510 0.61946 0.0604 -0.55906 0.09751 <0.000001 UCSC
1 PRDM2 14219958 14220429 0.61576 0.11114 -0.50461 0.1805 <0.000001 UCSC
1 HMGCL 24152466 24152717 0.60927 0.89876 0.28949 1.47515 <0.000001 UCSC
1 SNORD103A 31422910 31423184 0.59079 0.86518 0.27439 1.46445 <0.000001 UCSC
1 MORN1 2252712 2253008 0.57452 0.88227 0.30774 1.53565 <0.000001 UCSC
1 RERE 8406144 8409667 0.56941 0.29563 -0.27378 0.51919 <0.000001 UCSC
1 THEM5 151826041 151826249 0.5617 0.87603 0.31433 1.55961 <0.000001 UCSC
1 PROX1 214169444 214170844 0.55718 0.924 0.36683 1.65837 <0.000001 UCSC
1 CHD1L 146713895 146714083 0.55407 0.12895 -0.42513 0.23272 <0.000001 UCSC
1 ZNF644 91303908 91307402 0.55394 0.80753 0.25359 1.45778 <0.000001 UCSC
1 TFAP2E 36042907 36043093 0.55348 0.81021 0.25673 1.46386 <0.000001 UCSC
1 ZNHIT6 86081516 86081844 0.55027 0.88585 0.33558 1.60985 <0.000001 UCSC
1 MORN1 2324141 2324288 0.54887 0.14877 -0.4001 0.27105 <0.000001 UCSC
1 SMYD3 246581567 246582584 0.54879 0.8176 0.26881 1.48982 <0.000001 UCSC
1 MYCL 40387308 40389310 0.54647 0.86052 0.31405 1.57468 0.006618 UCSC
1 CD58 117112468 117113002 0.54594 0.15469 -0.39125 0.28335 <0.000001 UCSC
1 ZC3H11A 203765939 203770150 0.53466 0.71363 0.17898 1.33475 <0.000001 UCSC
1 SLC6A9 44482303 44483567 0.53441 0.78772 0.25331 1.474 <0.000001 UCSC
1 SLC26A9 205897077 205898358 0.53368 0.86327 0.32959 1.61758 <0.000001 UCSC
1 PRDM16 3276265 3278412 0.52466 0.85154 0.32687 1.62301 <0.000001 UCSC
1 CASZ1 10839192 10839832 0.52329 0.84091 0.31762 1.60696 <0.000001 UCSC
1 WNT4 22470226 22470407 0.5147 0.10646 -0.40824 0.20684 <0.000001 UCSC
1 RUNX3 25347913 25350596 0.50109 0.14441 -0.35668 0.28819 <0.000001 UCSC
1 LMNA 156095414 156096646 0.49836 0.20867 -0.28969 0.41871 <0.000001 UCSC
1 ZBTB18 244317952 244320008 0.49804 0.89703 0.39899 1.80112 <0.000001 UCSC
1 DMRTA2 50893666 50897998 0.47874 0.08786 -0.39087 0.18353 <0.000001 UCSC
1 PRDM16 3076911 3079411 0.47096 0.80492 0.33396 1.70909 <0.000001 UCSC
1 MEGF6 3473455 3474844 0.4668 0.83476 0.36796 1.78826 <0.000001 UCSC
1 FLJ42875 2984139 2984354 0.46417 0.19502 -0.26914 0.42016 <0.000001 UCSC
1 VPS13D 12537873 12539146 0.45561 0.11646 -0.33914 0.25562 <0.000001 UCSC
1 ELAVL4 50571348 50572411 0.45401 0.85468 0.40067 1.88251 <0.000001 UCSC
1 No Gene 234666172 234668278 0.45228 0.72419 0.27191 1.6012 <0.000001 UCSC
1 PRDM16 3133295 3134630 0.45128 0.81656 0.36529 1.80946 0.000029 UCSC
1 PRDM2 14112704 14113698 0.4488 0.89725 0.44845 1.99923 <0.000001 UCSC
1 ABCA4 94560229 94561556 0.43848 0.6688 0.23031 1.52525 0.000456 UCSC
1 HSD11B1 209877683 209878436 0.43321 0.89348 0.46026 2.06244 <0.000001 UCSC
1 DDR2 162602275 162602791 0.42475 0.09206 -0.33268 0.21675 <0.000001 UCSC
1 ACAP3 1237708 1240146 0.42411 0.73534 0.31122 1.73383 <0.000001 UCSC
1 PRRX1 170635336 170638683 0.42157 0.83236 0.41078 1.97441 <0.000001 UCSC
1 PDE4B 66797233 66798169 0.42056 0.14064 -0.27992 0.33441 0.000002 UCSC
1 EPS15 51985195 51985323 0.41668 0.12023 -0.29645 0.28854 <0.000001 UCSC
1 PRDM16 3056600 3056834 0.41482 0.79618 0.38136 1.91932 <0.000001 UCSC
1 DMRTA2 50886841 50887048 0.4112 0.10339 -0.30781 0.25143 <0.000001 UCSC
1 F3 95006303 95006599 0.40573 0.85627 0.45054 2.11045 <0.000001 UCSC
1 GALNT2 230271838 230273124 0.40527 0.90819 0.50293 2.24099 <0.000001 UCSC
1 C1orf187 11760598 11761554 0.40103 0.80471 0.40367 2.00659 <0.000001 UCSC
1 IFNLR1 24476168 24477998 0.38967 0.36701 -0.02267 0.94183 0.000002 UCSC
1 VASH2 213089201 213091155 0.38179 0.23957 -0.14222 0.62748 0.000043 UCSC
1 B4GALT2 44445974 44446210 0.37716 0.652 0.27485 1.72875 <0.000001 UCSC
1 RNF223 999435 999763 0.37545 0.08261 -0.29284 0.22003 <0.000001 UCSC
1 MARCKSL1 32802227 32802376 0.37344 0.73363 0.36019 1.96453 <0.000001 UCSC
1 C1orf230 151693135 151693325 0.37192 0.04625 -0.32567 0.12435 <0.000001 UCSC
1 KIAA1522 33230602 33231781 0.36392 0.83955 0.47563 2.30695 <0.000001 UCSC
1 SKI 2230453 2230816 0.36317 0.83208 0.46892 2.29119 <0.000001 UCSC
1 C1orf130 24882040 24882320 0.36057 0.73901 0.37844 2.04957 0.000108 UCSC
1 ILDR2 166890301 166890515 0.35753 0.05398 -0.30355 0.15098 <0.000001 UCSC
1 LINC00210 218097507 218099508 0.35733 0.79934 0.44201 2.23697 <0.000001 UCSC
1 RUNX3 25253940 25254297 0.35728 0.90888 0.5516 2.54389 <0.000001 UCSC
1 ZNF644 91300051 91300610 0.35421 0.83478 0.48057 2.35677 <0.000001 UCSC
1 COL16A1 32170457 32173951 0.35021 0.76319 0.41298 2.17921 <0.000001 UCSC
1 FAM19A3 113265523 113265832 0.34783 0.08461 -0.26322 0.24326 <0.000001 UCSC
1 SLC45A1 8377704 8377951 0.34155 0.73019 0.38864 2.13786 <0.000001 UCSC
1 UBE4B 10238016 10242772 0.34086 0.82105 0.4802 2.4088 <0.000001 UCSC
1 FOXD3 63790948 63794610 0.33032 0.74284 0.41251 2.24881 <0.000001 UCSC
1 KLHDC8A 205325601 205326117 0.31515 0.7598 0.44464 2.41087 <0.000001 UCSC
1 ZNF697 120173891 120174407 0.30933 0.10418 -0.20516 0.33678 <0.000001 UCSC
1 UBL4B 110672605 110672933 0.29379 0.08137 -0.21242 0.27698 <0.000001 UCSC
1 RCC2 17746359 17746745 0.28969 0.0671 -0.22259 0.23161 <0.000001 UCSC
1 S100A13 153599221 153600089 0.28756 0.08149 -0.20607 0.28338 <0.000001 UCSC
1 PTCH2 45283820 45288063 0.28681 0.24864 -0.03816 0.86694 <0.000001 UCSC
1 NDUFS2 161167510 161170776 0.28461 0.58636 0.30175 2.06024 <0.000001 UCSC
1 FBLIM1 16081354 16084848 0.28109 0.54032 0.25923 1.92225 0.000212 UCSC
1 SNORD46 45242043 45242339 0.28011 0.0584 -0.22172 0.20848 <0.000001 UCSC
1 GNB1 1713861 1714084 0.27546 0.09166 -0.1838 0.33276 0.000054 UCSC
1 MAP1LC3C 242161312 242162349 0.26246 0.06701 -0.19545 0.25531 <0.000001 UCSC
1 GNG12 68299345 68299575 0.26094 0.06143 -0.19951 0.23542 <0.000001 UCSC
1 NPR1 153669872 153671926 0.26024 0.77175 0.5115 2.96547 <0.000001 UCSC
1 TNFSF4 173176104 173176624 0.23927 0.7568 0.51753 3.16296 <0.000001 UCSC
1 MIR4666A 228657463 228657791 0.20851 0.79529 0.58678 3.81412 <0.000001 UCSC
1 TCEA3 23751152 23751253 0.19345 0.0485 -0.14496 0.25068 <0.000001 UCSC
1 PTPN14 214725809 214725937 0.17804 0.05109 -0.12695 0.28694 <0.000001 UCSC
1 ST6GALNAC5 77229704 77231752 0.16962 0.67533 0.50571 3.98141 0.000058 UCSC
1 LINC00466 63538814 63541132 0.16454 0.77157 0.60704 4.68936 <0.000001 UCSC
1 HIST3H2BB 228644853 228645027 0.16202 0.04422 -0.1178 0.27293 <0.000001 UCSC
1 ADAMTSL4 150521126 150521305 0.15505 0.0327 -0.12234 0.21093 <0.000001 UCSC
1 OLFM3 102312140 102313139 0.13885 0.7388 0.59995 5.32072 <0.000001 UCSC
1 No Gene 158119231 158119559 0.12856 0.03313 -0.09544 0.25769 <0.000001 UCSC
1 C1orf61 156357675 156358069 0.12709 0.67221 0.54512 5.28933 <0.000001 UCSC
1 OTUD7B 149981536 149981852 0.12653 0.07831 -0.04822 0.61888 0.000009 UCSC
1 GAS5 173836579 173836875 0.09491 0.0356 -0.05931 0.37511 <0.000001 UCSC
1 TCTEX1D1 67217762 67217890 0.09441 0.58648 0.49207 6.21204 0.000092 UCSC
1 LINC00862 200271948 200272379 0.09436 0.71494 0.62057 7.57652 <0.000001 UCSC
1 AGRN 976089 976306 0.08813 0.02862 -0.05951 0.32477 <0.000001 UCSC
1 PLEKHA6 204328746 204329262 0.07426 0.55946 0.4852 7.53416 <0.000001 UCSC
1 S100A11 152008859 152009017 0.06978 0.02765 -0.04213 0.3963 <0.000001 UCSC
1 MFSD4 205560795 205561150 0.06121 0.03964 -0.02157 0.64762 0.000069 UCSC
1 DNAH14 225117388 225117474 0.061 0.03086 -0.03014 0.50586 <0.000001 UCSC
1 ANKRD34A 145473552 145473779 0.04237 0.01704 -0.02533 0.40224 <0.000001 UCSC
1 RHOU 228872106 228872264 0.03479 0.81936 0.78457 23.55018 <0.000001 UCSC
 
 
© 2017 Cai Laboratory.  Last updated on 30 December 2017