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  DMRs of TCGA_READ  
 
Chromosome:  
  There are totally 129 DMRs found in chromosome 1.
Note: For small series(<30 samples), M-values are transformed into beta-values.Download table		  
 
Chr Gene Start End Control Avg Tumor Avg Delta Beta Fold P Value UCSC
1 C1orf70 1475115 1475856 0.23848 0.5935 0.35502 2.48866 <0.000001 UCSC
1 FOXD2 47911285 47911613 0.23916 0.57633 0.33716 2.40976 <0.000001 UCSC
1 NR5A2 200004505 200004663 0.18248 0.50096 0.31848 2.74524 0.000035 UCSC
1 No Gene 164290667 164290997 0.14958 0.44698 0.29739 2.98815 0.000157 UCSC
1 ESRRG 217311503 217311559 0.28977 0.58299 0.29322 2.01192 0.000003 UCSC
1 PLD5 242687408 242687646 0.17112 0.45904 0.28792 2.68259 0.000004 UCSC
1 LPPR4 99729751 99729825 0.19837 0.47439 0.27602 2.39144 <0.000001 UCSC
1 RXRG 165414086 165414625 0.18061 0.4481 0.26749 2.481 <0.000001 UCSC
1 PRRX1 170630233 170630561 0.3633 0.62944 0.26614 1.73258 <0.000001 UCSC
1 ELAVL4 50513645 50513663 0.31818 0.5754 0.25722 1.80839 0.000026 UCSC
1 ST6GALNAC5 77333155 77333241 0.26942 0.51578 0.24637 1.91445 0.000004 UCSC
1 DMRTA2 50886841 50887048 0.31607 0.56078 0.24471 1.77423 <0.000001 UCSC
1 WARS2 119541995 119543379 0.37258 0.61639 0.24381 1.65437 <0.000001 UCSC
1 SYT6 114696632 114696764 0.22122 0.45656 0.23534 2.06386 0.000606 UCSC
1 DAB1 58715449 58715603 0.27922 0.51251 0.2333 1.83554 0.000003 UCSC
1 MIR2682 98511126 98511342 0.2775 0.50359 0.22609 1.81473 0.000022 UCSC
1 MIR5087 147782394 147782722 0.38912 0.60407 0.21495 1.55242 0.000064 UCSC
1 BARHL2 91190087 91190530 0.43545 0.64393 0.20848 1.47876 <0.000001 UCSC
1 CD34 208083880 208084506 0.38761 0.59375 0.20614 1.53181 <0.000001 UCSC
1 LOC148696 207995585 207997333 0.32411 0.52642 0.20231 1.62421 0.000505 UCSC
1 RUNX3 25257538 25257657 0.38636 0.58819 0.20183 1.52239 <0.000001 UCSC
1 AJAP1 4715429 4715599 0.31563 0.51571 0.20007 1.63388 0.000008 UCSC
1 TCTEX1D1 67217760 67217952 0.31068 0.50928 0.19859 1.63922 0.000156 UCSC
1 BARHL2 91184864 91185317 0.45591 0.64968 0.19377 1.42503 <0.000001 UCSC
1 NTNG1 108023299 108023665 0.42996 0.62353 0.19357 1.4502 0.000204 UCSC
1 TNFSF4 173176116 173176612 0.3994 0.58059 0.18119 1.45366 0.000198 UCSC
1 CASZ1 10731630 10733463 0.63014 0.81036 0.18022 1.286 <0.000001 UCSC
1 ZNF644 91300051 91300610 0.47524 0.65508 0.17984 1.37842 <0.000001 UCSC
1 PRDM16 3164311 3164510 0.35074 0.52952 0.17878 1.50972 0.000139 UCSC
1 TFAP2E 36042907 36043093 0.43391 0.61002 0.1761 1.40585 0.000003 UCSC
1 TNFRSF25 6525970 6526152 0.4684 0.63681 0.16841 1.35955 <0.000001 UCSC
1 KCNA3 111218210 111218353 0.55497 0.72336 0.1684 1.30344 0.000018 UCSC
1 FLJ42875 2984139 2984354 0.34194 0.50884 0.1669 1.48809 0.000088 UCSC
1 FOXD2 48058877 48059045 0.50053 0.66657 0.16605 1.33175 0.000070 UCSC
1 TBX15 119532013 119532136 0.5209 0.68537 0.16447 1.31575 <0.000001 UCSC
1 TP73 3567691 3567766 0.55995 0.72337 0.16342 1.29184 <0.000001 UCSC
1 LOC100129924 43250527 43250855 0.48159 0.63769 0.1561 1.32413 0.000097 UCSC
1 FBLIM1 16081360 16084842 0.28988 0.44576 0.15588 1.53774 <0.000001 UCSC
1 HLX 221057479 221057652 0.68587 0.84051 0.15464 1.22547 <0.000001 UCSC
1 ACTN2 236850211 236850511 0.57838 0.71925 0.14087 1.24356 0.000061 UCSC
1 OR2L13 248100542 248100657 0.51645 0.65524 0.13879 1.26875 0.000151 UCSC
1 C2CD4D 151810808 151810983 0.51677 0.64818 0.1314 1.25428 0.000007 UCSC
1 C1orf61 156357675 156358069 0.56316 0.67986 0.1167 1.20723 0.000025 UCSC
1 HLX 221055640 221055798 0.63676 0.74596 0.1092 1.17149 0.000023 UCSC
1 SDCCAG8 243646168 243646468 0.60482 0.71094 0.10612 1.17546 0.000059 UCSC
1 PRKCZ 2005410 2005643 0.70413 0.79765 0.09351 1.13281 0.000024 UCSC
1 KIAA1522 33230637 33231746 0.72415 0.81409 0.08994 1.1242 <0.000001 UCSC
1 NCDN 36025359 36027446 0.79524 0.86613 0.07089 1.08915 0.003229 UCSC
1 DNM3 172113073 172114501 0.79772 0.86497 0.06725 1.08431 0.000001 UCSC
1 MEF2D 156464119 156468359 0.44863 0.51167 0.06304 1.14051 0.002346 UCSC
1 ACOT7 6390040 6391263 0.79715 0.85968 0.06254 1.07845 0.000006 UCSC
1 SNAP47 227962290 227963729 0.81843 0.87778 0.05935 1.07252 0.000003 UCSC
1 NUP210L 154127380 154127619 0.83533 0.89431 0.05898 1.07061 0.000031 UCSC
1 PVRL4 161049500 161049734 0.81883 0.86824 0.04941 1.06034 0.000015 UCSC
1 ARHGEF10L 17943923 17945093 0.85112 0.8987 0.04758 1.0559 0.000144 UCSC
1 PROX1 214169479 214170674 0.86876 0.91269 0.04393 1.05057 0.000003 UCSC
1 MIR5087 147800216 147804720 0.71584 0.74046 0.02462 1.03439 0.000016 UCSC
1 GRHL3 24645356 24647026 0.13992 0.11093 -0.02899 0.7928 0.001062 UCSC
1 GOLT1A 204182524 204183390 0.11519 0.0752 -0.03999 0.65284 <0.000001 UCSC
1 CAMK2N1 20801944 20803959 0.29402 0.25176 -0.04225 0.85629 0.000618 UCSC
1 TTC22 55267200 55267359 0.11896 0.07379 -0.04517 0.62032 <0.000001 UCSC
1 GBP4 89663827 89664840 0.16536 0.11942 -0.04594 0.72219 0.002835 UCSC
1 CD58 117112466 117113004 0.18635 0.13451 -0.05183 0.72184 0.000034 UCSC
1 No Gene 1078687 1080753 0.36522 0.31096 -0.05426 0.85142 0.012483 UCSC
1 LAMC2 183155140 183156077 0.17676 0.12115 -0.05561 0.68539 <0.000001 UCSC
1 SLC44A3 95285339 95285471 0.27999 0.20911 -0.07087 0.74687 0.000345 UCSC
1 TUFT1 151513286 151513652 0.19143 0.11842 -0.07301 0.61863 0.000008 UCSC
1 LOC100130417 846638 850181 0.46125 0.38779 -0.07346 0.84074 0.012429 UCSC
1 SERTAD4 210424978 210427232 0.27626 0.19937 -0.07689 0.72169 0.002040 UCSC
1 OBSCN 228559004 228559235 0.58609 0.50712 -0.07898 0.86525 0.001001 UCSC
1 SSBP3 54821760 54822110 0.33005 0.24292 -0.08713 0.73602 <0.000001 UCSC
1 ITLN1 160854708 160855200 0.3417 0.25041 -0.09128 0.73285 0.001243 UCSC
1 SYTL1 27668395 27668471 0.26749 0.17505 -0.09243 0.65444 0.000092 UCSC
1 S100A9 153330153 153330645 0.29137 0.1931 -0.09827 0.66273 0.000013 UCSC
1 PVRL4 161059021 161059513 0.46024 0.36069 -0.09954 0.78371 0.000124 UCSC
1 ELF3 201979364 201980184 0.44267 0.34238 -0.10029 0.77345 <0.000001 UCSC
1 TTC34 2701753 2705235 0.37421 0.2713 -0.10292 0.72498 0.000553 UCSC
1 RAP1GAP 21933477 21935159 0.37199 0.26363 -0.10836 0.70871 0.000183 UCSC
1 CHD1L 146713893 146714085 0.36704 0.25715 -0.1099 0.70059 0.000004 UCSC
1 LAMB3 209825558 209825829 0.50954 0.39925 -0.11029 0.78356 0.001194 UCSC
1 C1orf170 916028 918084 0.54595 0.43224 -0.11371 0.79172 0.000146 UCSC
1 TNFRSF8 12201570 12206097 0.5769 0.45632 -0.12058 0.79099 0.003562 UCSC
1 PRDM16 3271827 3273567 0.63926 0.51418 -0.12508 0.80433 0.002086 UCSC
1 TCTEX1D4 45273765 45275435 0.42173 0.29635 -0.12539 0.70269 0.002783 UCSC
1 S100A16 153581248 153582039 0.40368 0.27591 -0.12777 0.68348 <0.000001 UCSC
1 KIRREL 157894722 157896470 0.8226 0.6948 -0.1278 0.84464 0.000462 UCSC
1 DHRS3 12608434 12610579 0.46454 0.32865 -0.13589 0.70748 0.000029 UCSC
1 PLCH2 2376780 2381491 0.64567 0.50842 -0.13725 0.78743 0.000650 UCSC
1 PLCH2 2388960 2392442 0.64785 0.50835 -0.1395 0.78467 0.000052 UCSC
1 C1orf106 200862593 200865937 0.58704 0.4461 -0.14094 0.75991 <0.000001 UCSC
1 ACTRT2 2839061 2841182 0.67555 0.53267 -0.14288 0.7885 0.003251 UCSC
1 ACTRT2 2953234 2955303 0.59899 0.45303 -0.14596 0.75633 0.000409 UCSC
1 TTC34 2721865 2723922 0.68198 0.53578 -0.14621 0.78562 0.000931 UCSC
1 C1orf226 162351543 162352456 0.50671 0.35971 -0.147 0.70989 0.000054 UCSC
1 CADM3 159170619 159174621 0.55384 0.40445 -0.14939 0.73027 <0.000001 UCSC
1 C1QC 22968709 22971969 0.56475 0.41144 -0.1533 0.72855 0.000003 UCSC
1 ACTRT2 2946148 2947896 0.72278 0.56675 -0.15603 0.78413 0.000572 UCSC
1 EPRS 220131217 220133352 0.53752 0.37871 -0.15881 0.70455 0.000038 UCSC
1 HES4 939641 946524 0.65405 0.49406 -0.15999 0.75539 0.000035 UCSC
1 ACTRT2 2795319 2797565 0.68351 0.52343 -0.16008 0.7658 0.000064 UCSC
1 MIR34A 9223129 9225250 0.35074 0.18969 -0.16106 0.54081 0.000003 UCSC
1 PER3 7842205 7842570 0.3735 0.21112 -0.16237 0.56526 <0.000001 UCSC
1 S100A8 153362494 153363360 0.49672 0.33228 -0.16444 0.66894 0.000008 UCSC
1 TNFRSF1B 12227675 12227975 0.29128 0.12361 -0.16767 0.42437 <0.000001 UCSC
1 S100A7L2 153413757 153414054 0.58777 0.41659 -0.17118 0.70876 0.000221 UCSC
1 KPRP 152729088 152732348 0.60346 0.43075 -0.17271 0.7138 <0.000001 UCSC
1 LOC653160 35390567 35394049 0.57237 0.39953 -0.17284 0.69802 0.000024 UCSC
1 LCE2A 152669706 152673708 0.46809 0.29427 -0.17382 0.62866 <0.000001 UCSC
1 RER1 2361867 2366637 0.705 0.52913 -0.17587 0.75054 0.000040 UCSC
1 LOC100130417 832681 835230 0.70497 0.5259 -0.17907 0.74599 0.000051 UCSC
1 LCE1F 152747358 152747676 0.55174 0.36918 -0.18256 0.66912 0.000007 UCSC
1 C1orf110 162838695 162838923 0.74134 0.55852 -0.18282 0.75339 0.000775 UCSC
1 LINC01132 234907352 234909388 0.28807 0.1035 -0.18457 0.35927 <0.000001 UCSC
1 F3 95006301 95006601 0.48663 0.29684 -0.18979 0.60999 0.000007 UCSC
1 LELP1 153175576 153179578 0.70412 0.50858 -0.19554 0.72229 0.000055 UCSC
1 CNST 246728597 246728793 0.58064 0.38478 -0.19586 0.66268 0.000054 UCSC
1 MIR4689 5812007 5813755 0.63297 0.43476 -0.19821 0.68687 0.000289 UCSC
1 DISP1 222987557 222987885 0.73499 0.53045 -0.20454 0.72171 0.000622 UCSC
1 APCS 159556511 159560513 0.69323 0.48734 -0.20588 0.70301 0.000002 UCSC
1 ACOT7 6333069 6334300 0.6874 0.47553 -0.21187 0.69178 0.000005 UCSC
1 PLCH2 2428431 2429438 0.60057 0.38644 -0.21413 0.64346 <0.000001 UCSC
1 TAS1R3 1267114 1267331 0.73219 0.51034 -0.22184 0.69701 <0.000001 UCSC
1 KIF26B 245534388 245535364 0.78593 0.56389 -0.22204 0.71749 0.001037 UCSC
1 CD1B 158300605 158301471 0.68439 0.46151 -0.22288 0.67434 0.000029 UCSC
1 PCNXL2 233248412 233249278 0.40796 0.17847 -0.22949 0.43747 <0.000001 UCSC
1 C1orf228 45186795 45188465 0.51669 0.27456 -0.24214 0.53138 <0.000001 UCSC
1 PAPPA2 176809644 176813646 0.7062 0.45869 -0.24751 0.64952 0.000062 UCSC
1 KLF17 44584403 44584455 0.87071 0.61165 -0.25906 0.70247 0.000601 UCSC
1 PRDM16 3353601 3355278 0.74345 0.47726 -0.26618 0.64196 0.000005 UCSC
 
 
© 2017 Cai Laboratory.  Last updated on 30 December 2017