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  DMRs of TCGA_THYM  
 
Chromosome:  
  There are totally 174 DMRs found in chromosome 1.
Note: For small series(<30 samples), M-values are transformed into beta-values.Download table		  
 
Chr Gene Start End Control Avg Tumor Avg Delta Beta Fold P Value UCSC
1 SEMA4A 156118539 156120536 0.39614 0.72985 0.33371 1.84239 0.000079 UCSC
1 RASSF5 206729403 206729835 0.4812 0.8049 0.3237 1.6727 <0.000001 UCSC
1 MIR34A 9223085 9225294 0.36574 0.66967 0.30392 1.83098 <0.000001 UCSC
1 RGS8 182641781 182642291 0.46705 0.76592 0.29888 1.63993 <0.000001 UCSC
1 S100A3 153521457 153521967 0.48453 0.78258 0.29805 1.61515 0.000020 UCSC
1 MEGF6 3476709 3477901 0.52591 0.81639 0.29047 1.55232 <0.000001 UCSC
1 OBSCN 228548524 228548892 0.51923 0.80687 0.28764 1.55398 <0.000001 UCSC
1 RUNX3 25291877 25292186 0.46079 0.72675 0.26596 1.57719 <0.000001 UCSC
1 MIR4689 5811095 5813810 0.52901 0.78706 0.25805 1.48779 0.000002 UCSC
1 TTLL10 1114813 1115220 0.5418 0.7957 0.2539 1.46863 <0.000001 UCSC
1 LAX1 203734100 203735018 0.24843 0.50144 0.253 2.0184 0.000006 UCSC
1 CYMP 111022717 111022945 0.63752 0.88625 0.24873 1.39016 <0.000001 UCSC
1 LCE4A 152681061 152682897 0.61794 0.86626 0.24832 1.40185 <0.000001 UCSC
1 SKINTL 48450717 48454488 0.47257 0.71885 0.24627 1.52114 0.000028 UCSC
1 C1orf226 162351517 162352482 0.63955 0.8838 0.24425 1.38192 <0.000001 UCSC
1 PRDM2 14220524 14224020 0.6363 0.87828 0.24197 1.38028 <0.000001 UCSC
1 ACTRT2 2953190 2955347 0.56611 0.79432 0.22821 1.40313 0.000071 UCSC
1 ARHGEF16 3383001 3384330 0.64986 0.8719 0.22204 1.34168 <0.000001 UCSC
1 UBXN11 26644800 26648802 0.45422 0.67226 0.21805 1.48005 0.000512 UCSC
1 HRNR 152196342 152196852 0.64729 0.86155 0.21426 1.33101 <0.000001 UCSC
1 KIRREL 157959421 157962917 0.43461 0.64827 0.21366 1.49162 0.017010 UCSC
1 SLC26A9 205896700 205898004 0.67559 0.88187 0.20629 1.30534 <0.000001 UCSC
1 AADACL4 12703854 12704082 0.6975 0.90165 0.20415 1.29269 <0.000001 UCSC
1 EPS8L3 110307697 110308026 0.66726 0.87125 0.20399 1.30571 <0.000001 UCSC
1 TMEM52 1849011 1849379 0.69034 0.89281 0.20248 1.2933 <0.000001 UCSC
1 NFASC 204839564 204840130 0.63215 0.8345 0.20236 1.32011 <0.000001 UCSC
1 MEGF6 3424327 3424627 0.71293 0.91385 0.20093 1.28183 <0.000001 UCSC
1 GABRD 1962222 1966811 0.63003 0.8293 0.19928 1.3163 0.000019 UCSC
1 MIR135B 205420689 205424185 0.49922 0.69659 0.19737 1.39535 0.000771 UCSC
1 SLAMF9 159923066 159924320 0.6156 0.81265 0.19705 1.3201 0.000003 UCSC
1 RXRG 165327520 165331016 0.69374 0.88896 0.19522 1.2814 <0.000001 UCSC
1 GABRD 1959734 1959892 0.68388 0.87807 0.19419 1.28396 <0.000001 UCSC
1 LRRC38 13835004 13838500 0.6354 0.8255 0.1901 1.29918 0.000229 UCSC
1 No Gene 3999207 4001518 0.56436 0.75428 0.18992 1.33653 0.000062 UCSC
1 FAM78B 166037443 166041445 0.66174 0.84675 0.18501 1.27959 <0.000001 UCSC
1 KIRREL 157894309 157897318 0.6448 0.82897 0.18416 1.28561 0.000001 UCSC
1 ARHGEF16 3379316 3380747 0.69943 0.88332 0.1839 1.26292 <0.000001 UCSC
1 MARCKSL1 32802227 32802376 0.41119 0.5947 0.18351 1.4463 0.000001 UCSC
1 LAPTM5 31231307 31231535 0.70615 0.88962 0.18347 1.25982 <0.000001 UCSC
1 PRDM16 3313575 3315956 0.67791 0.85995 0.18204 1.26853 <0.000001 UCSC
1 ELAVL4 50573697 50574976 0.54846 0.73034 0.18188 1.33162 0.000001 UCSC
1 TRAF5 211499556 211499712 0.60562 0.78584 0.18022 1.29758 <0.000001 UCSC
1 RER1 2361860 2365356 0.65709 0.83647 0.17938 1.273 <0.000001 UCSC
1 ARHGEF10L 17943897 17945119 0.71894 0.89146 0.17252 1.23997 <0.000001 UCSC
1 MIR200B 1097015 1097434 0.68549 0.85796 0.17248 1.25161 <0.000001 UCSC
1 ACTRT2 2934563 2938059 0.60936 0.78107 0.17171 1.28179 0.000009 UCSC
1 KCNT2 196578581 196582077 0.72995 0.90141 0.17146 1.23489 <0.000001 UCSC
1 KIAA1751 1876817 1880313 0.63781 0.80903 0.17123 1.26846 <0.000001 UCSC
1 ATF3 212688752 212689161 0.55293 0.72317 0.17023 1.30788 0.000003 UCSC
1 MEF2D 156464104 156468833 0.51462 0.68438 0.16976 1.32987 0.002437 UCSC
1 MIR765 156902855 156906857 0.60588 0.77558 0.16969 1.28008 <0.000001 UCSC
1 CHD5 6190953 6192989 0.66316 0.83214 0.16897 1.2548 <0.000001 UCSC
1 RCC2 17746359 17746747 0.21025 0.37701 0.16676 1.79317 0.000007 UCSC
1 KIAA1026 15254363 15256306 0.63207 0.7977 0.16563 1.26204 <0.000001 UCSC
1 MIR4689 5778245 5780301 0.68434 0.84933 0.16499 1.2411 0.000010 UCSC
1 GJA5 147228208 147232210 0.73429 0.89585 0.16156 1.22002 <0.000001 UCSC
1 FAM163A 179714526 179718376 0.7355 0.89636 0.16086 1.21871 0.000001 UCSC
1 B4GALT2 44444186 44444314 0.6303 0.79048 0.16018 1.25414 0.000039 UCSC
1 ACTRT2 2798436 2801112 0.63227 0.79243 0.16016 1.2533 0.000011 UCSC
1 GUCA2B 42619035 42619246 0.73278 0.8928 0.16002 1.21837 <0.000001 UCSC
1 GLIS1 53970002 53974004 0.69158 0.84837 0.1568 1.22672 <0.000001 UCSC
1 CHIT1 203199719 203200026 0.76006 0.91649 0.15643 1.20582 <0.000001 UCSC
1 ACTRT2 2898346 2901081 0.67041 0.82663 0.15622 1.23303 <0.000001 UCSC
1 MORN1 2259261 2259561 0.73734 0.89272 0.15538 1.21074 <0.000001 UCSC
1 PLCH2 2376773 2381498 0.55477 0.70955 0.15478 1.27899 <0.000001 UCSC
1 GJB3 35250228 35250464 0.69459 0.84651 0.15192 1.21872 <0.000001 UCSC
1 PRDM16 3044282 3045625 0.70362 0.85493 0.15131 1.21504 0.000036 UCSC
1 CADM3 159170619 159174621 0.57185 0.72195 0.15011 1.26249 0.002105 UCSC
1 PRKCZ 2020132 2024025 0.63209 0.78196 0.14987 1.2371 <0.000001 UCSC
1 MIR200B 1102444 1107923 0.63891 0.78818 0.14927 1.23363 <0.000001 UCSC
1 RSG1 16555721 16559217 0.74444 0.89193 0.1475 1.19813 <0.000001 UCSC
1 SLC2A7 9085687 9086605 0.74903 0.89583 0.1468 1.19599 <0.000001 UCSC
1 MEGF6 3495152 3497007 0.75401 0.90072 0.1467 1.19456 <0.000001 UCSC
1 NFASC 204954165 204955901 0.71519 0.86149 0.14631 1.20457 0.000461 UCSC
1 BEND5 49224366 49225354 0.79209 0.93744 0.14536 1.18351 <0.000001 UCSC
1 PLCH2 2427621 2428539 0.75047 0.89475 0.14427 1.19224 <0.000001 UCSC
1 CRP 159680496 159684498 0.74755 0.89114 0.1436 1.19209 <0.000001 UCSC
1 KIAA1751 1888231 1890081 0.60988 0.75288 0.14301 1.23449 <0.000001 UCSC
1 EFCAB2 245284586 245290471 0.76153 0.90434 0.14281 1.18753 <0.000001 UCSC
1 TDRD5 179556032 179559528 0.7443 0.8861 0.1418 1.19051 <0.000001 UCSC
1 NGF 115826678 115830680 0.75962 0.89974 0.14012 1.18445 <0.000001 UCSC
1 KPRP 152729073 152732363 0.58927 0.72732 0.13805 1.23426 0.000845 UCSC
1 PRKCZ 2042116 2045498 0.75581 0.89281 0.137 1.18127 0.006617 UCSC
1 OPTC 203462351 203462579 0.78674 0.92281 0.13606 1.17295 <0.000001 UCSC
1 CAMTA1 7293759 7294677 0.77807 0.91391 0.13584 1.17459 <0.000001 UCSC
1 PLEKHG5 6565679 6566987 0.7819 0.91748 0.13558 1.1734 <0.000001 UCSC
1 MMEL1 2540074 2542104 0.70879 0.8432 0.13441 1.18963 0.000012 UCSC
1 MORN1 2270057 2274763 0.76116 0.89546 0.13431 1.17645 <0.000001 UCSC
1 PRDM16 3007242 3008369 0.74012 0.87432 0.13419 1.18131 0.000050 UCSC
1 ZNF691 43316621 43317650 0.8034 0.93731 0.13391 1.16667 <0.000001 UCSC
1 PLA2G2F 20465104 20465332 0.75904 0.89136 0.13232 1.17432 0.000013 UCSC
1 CAMTA1 7318446 7319707 0.77312 0.90541 0.13228 1.1711 <0.000001 UCSC
1 C1orf170 915995 918117 0.56022 0.69139 0.13118 1.23415 0.001373 UCSC
1 No Gene 1060603 1065946 0.69915 0.82924 0.13009 1.18607 <0.000001 UCSC
1 ENAH 225670514 225672822 0.70654 0.83533 0.12878 1.18227 0.000853 UCSC
1 PRKCZ 1987813 1989635 0.79069 0.91789 0.1272 1.16087 <0.000001 UCSC
1 MIR5087 147759315 147761540 0.64579 0.77084 0.12505 1.19364 0.000062 UCSC
1 OBSCN 228509617 228509775 0.80072 0.92531 0.12459 1.1556 <0.000001 UCSC
1 MIR4417 5539040 5541868 0.75576 0.87976 0.124 1.16407 0.000009 UCSC
1 CAMTA1 7710260 7711538 0.76588 0.88856 0.12267 1.16017 <0.000001 UCSC
1 OBSCN 228473854 228474012 0.78354 0.90578 0.12224 1.15601 <0.000001 UCSC
1 KIF26B 245726668 245728117 0.7594 0.88151 0.12211 1.16079 <0.000001 UCSC
1 FLJ40434 53903915 53904238 0.81787 0.939 0.12113 1.1481 <0.000001 UCSC
1 ACTRT2 2838845 2841226 0.56957 0.68437 0.1148 1.20157 0.002349 UCSC
1 PRKCZ 2000003 2003752 0.78764 0.90241 0.11477 1.14572 <0.000001 UCSC
1 KIAA1751 1870215 1873781 0.71516 0.82973 0.11457 1.16021 0.000198 UCSC
1 ACTRT2 2886709 2886951 0.77427 0.88769 0.11342 1.14649 0.000020 UCSC
1 RYR2 237947336 237947494 0.84656 0.95841 0.11185 1.13212 <0.000001 UCSC
1 C1orf198 230992361 230993449 0.60873 0.71951 0.11079 1.182 <0.000001 UCSC
1 LOC149134 246953438 246956934 0.77891 0.88896 0.11005 1.14129 0.000003 UCSC
1 MEGF6 3523557 3525327 0.78036 0.89019 0.10983 1.14075 0.000003 UCSC
1 TMEM51 15544371 15548373 0.75843 0.8672 0.10877 1.14341 0.000079 UCSC
1 PTPRF 44070957 44071115 0.79029 0.89773 0.10744 1.13596 0.000053 UCSC
1 LOC100133612 3830580 3831773 0.78606 0.89284 0.10679 1.13585 <0.000001 UCSC
1 CAMTA1 7184128 7185242 0.8004 0.90139 0.10099 1.12617 <0.000001 UCSC
1 PLCH2 2383557 2387053 0.72294 0.82331 0.10037 1.13884 0.000019 UCSC
1 FMO3 171059803 171060326 0.83899 0.93832 0.09933 1.11839 <0.000001 UCSC
1 No Gene 244090710 244094206 0.7656 0.86301 0.09741 1.12723 <0.000001 UCSC
1 MORN1 2287840 2288922 0.79961 0.89666 0.09705 1.12137 0.000078 UCSC
1 TNFRSF18 1138735 1140471 0.7461 0.84285 0.09675 1.12968 0.018751 UCSC
1 GLIS1 54198180 54201470 0.76674 0.86345 0.09671 1.12613 0.003410 UCSC
1 MAP1LC3C 242119720 242122981 0.81096 0.9068 0.09584 1.11818 <0.000001 UCSC
1 PRSS38 227999907 228003403 0.82601 0.92059 0.09458 1.1145 0.000288 UCSC
1 AJAP1 4835121 4839123 0.81934 0.91112 0.09178 1.11201 0.000007 UCSC
1 MEGF6 3435958 3436116 0.80825 0.89874 0.09048 1.11195 0.000020 UCSC
1 ARHGEF10L 17949484 17949683 0.76042 0.85039 0.08997 1.11832 0.000001 UCSC
1 RYR2 237628503 237629466 0.83913 0.92615 0.08702 1.10371 0.000002 UCSC
1 GUCA2B 42505776 42507897 0.81202 0.89811 0.0861 1.10603 0.000002 UCSC
1 EPHB2 23191011 23192123 0.85978 0.94528 0.08549 1.09944 <0.000001 UCSC
1 DCST1 155006105 155006615 0.81504 0.90049 0.08545 1.10485 <0.000001 UCSC
1 PRKCZ 2099286 2100894 0.81982 0.90439 0.08458 1.10317 <0.000001 UCSC
1 RAP1GAP 21930179 21930415 0.83405 0.91834 0.08428 1.10105 0.000113 UCSC
1 GJB5 35222379 35224884 0.84076 0.92418 0.08342 1.09922 0.000007 UCSC
1 GUCA2A 42626448 42630450 0.83049 0.9079 0.0774 1.0932 <0.000001 UCSC
1 PLCH2 2389373 2392869 0.65677 0.7338 0.07703 1.11728 0.000694 UCSC
1 PRKCZ 2103764 2105613 0.84709 0.92219 0.0751 1.08866 0.000028 UCSC
1 CASZ1 10732413 10733936 0.80848 0.88298 0.07451 1.09216 <0.000001 UCSC
1 FCRL6 159771703 159771931 0.87328 0.9467 0.07342 1.08408 <0.000001 UCSC
1 HSPG2 22213651 22213951 0.84658 0.9193 0.07272 1.0859 <0.000001 UCSC
1 DESI2 244805289 244807369 0.83158 0.90199 0.07041 1.08467 <0.000001 UCSC
1 KIAA1026 15127757 15128057 0.85186 0.92088 0.06901 1.08102 0.000002 UCSC
1 ACTRT2 2822113 2826937 0.59151 0.65596 0.06445 1.10896 0.022085 UCSC
1 GLIS1 54142760 54143423 0.87198 0.93601 0.06403 1.07343 <0.000001 UCSC
1 CELA2A 15782984 15783972 0.85814 0.92208 0.06393 1.0745 <0.000001 UCSC
1 RNU5E-1 80960851 80962824 0.80728 0.8708 0.06352 1.07869 <0.000001 UCSC
1 PLXNA2 208389929 208391169 0.8222 0.8853 0.0631 1.07674 0.000036 UCSC
1 CASZ1 10738110 10739228 0.85693 0.91692 0.05999 1.07 0.000254 UCSC
1 HTR1D 23516538 23520540 0.84093 0.89973 0.0588 1.06993 0.000050 UCSC
1 LDLRAD2 22149783 22150151 0.89391 0.95263 0.05873 1.0657 <0.000001 UCSC
1 MORN1 2317927 2320482 0.87912 0.93761 0.05849 1.06654 0.000997 UCSC
1 PBX1 164768425 164769549 0.89306 0.95148 0.05842 1.06541 <0.000001 UCSC
1 PTPN14 214557347 214557647 0.85706 0.91065 0.05359 1.06253 0.000007 UCSC
1 C1orf49 178481693 178481996 0.89459 0.9432 0.04861 1.05434 0.000010 UCSC
1 NEGR1-IT1 72884072 72886098 0.9035 0.94941 0.04591 1.05081 0.000447 UCSC
1 ZBTB18 244317949 244320011 0.88947 0.93326 0.0438 1.04924 0.000002 UCSC
1 GLUL 182350977 182354979 0.87652 0.91096 0.03444 1.03929 0.039234 UCSC
1 PTGFRN 117527618 117531620 0.72665 0.74672 0.02007 1.02762 0.000053 UCSC
1 ARHGAP29 94703124 94703219 0.03153 0.01855 -0.01298 0.58843 0.000006 UCSC
1 RBP7 10057260 10057355 0.04693 0.02465 -0.02229 0.52516 0.000003 UCSC
1 CSMD2 34630717 34630923 0.08138 0.04379 -0.03759 0.53811 <0.000001 UCSC
1 NID1 236227503 236227803 0.14187 0.10399 -0.03788 0.73298 0.001193 UCSC
1 DNAJC6 65775046 65775606 0.09113 0.0445 -0.04664 0.48827 <0.000001 UCSC
1 PIN1P1 70033509 70033710 0.10347 0.04755 -0.05592 0.45952 <0.000001 UCSC
1 C1orf173 75139444 75139516 0.14086 0.0752 -0.06566 0.53389 <0.000001 UCSC
1 C1orf133 210407471 210407489 0.13518 0.06109 -0.07409 0.4519 <0.000001 UCSC
1 PTGS2 186649469 186649580 0.10489 0.02886 -0.07604 0.2751 <0.000001 UCSC
1 AGBL4 50489524 50489639 0.13689 0.06049 -0.0764 0.44189 <0.000001 UCSC
1 LOC728448 40024512 40028521 0.83337 0.75534 -0.07803 0.90637 0.019874 UCSC
1 RNF220 44884017 44884229 0.2499 0.16813 -0.08177 0.67278 0.004169 UCSC
1 HOOK1 60280024 60280170 0.19668 0.09834 -0.09834 0.50001 <0.000001 UCSC
1 C1orf94 34632555 34632606 0.24516 0.13248 -0.11269 0.54037 <0.000001 UCSC
1 LPPR4 99729762 99729798 0.22763 0.11168 -0.11595 0.49063 0.000078 UCSC
1 SORT1 109940979 109941136 0.48919 0.33108 -0.15811 0.67679 0.000010 UCSC
1 ATG4C 63249085 63249327 0.47246 0.26084 -0.21163 0.55208 0.000023 UCSC
 
 
© 2017 Cai Laboratory.  Last updated on 30 December 2017