CAHM

 

Full name: colon adenocarcinoma hypermethylated Alias Symbol: LINC00468
Type: non-coding RNA Cytoband: 6q26
Entrez ID: 100526820 HGNC ID: HGNC:42860 Ensembl Gene: ENSG00000270419 OMIM ID: 615930

 

Expression of CAHM:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CAHM 100526820 235829_at -0.0265 0.9082
GSE26886 CAHM 100526820 235829_at 0.1049 0.5638
GSE45670 CAHM 100526820 235829_at -0.0900 0.5369
GSE53622 CAHM 100526820 128332 0.0706 0.5650
GSE53624 CAHM 100526820 128332 0.2519 0.0009
GSE63941 CAHM 100526820 235829_at -0.1156 0.6576
GSE77861 CAHM 100526820 235829_at -0.0440 0.6580
SRP133303 CAHM 100526820 RNAseq -0.3580 0.3388
SRP159526 CAHM 100526820 RNAseq 1.4468 0.0316
SRP219564 CAHM 100526820 RNAseq -0.2732 0.5523

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by CAHM expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of CAHM:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CAHM 100526820 2 5 23
GSE20123 CAHM 100526820 2 4 24
GSE43470 CAHM 100526820 3 0 40
GSE46452 CAHM 100526820 3 10 46
GSE47630 CAHM 100526820 8 5 27
GSE54993 CAHM 100526820 4 4 62
GSE54994 CAHM 100526820 9 8 36
GSE60625 CAHM 100526820 1 1 9
GSE74703 CAHM 100526820 3 0 33
GSE74704 CAHM 100526820 1 2 17
TCGA CAHM 100526820 13 21 62

Total number of gains: 49; Total number of losses: 60; Total Number of normals: 379.  

 

Somatic mutations of CAHM:

 

Generating mutation plots.

 

Highly correlated genes for CAHM:

 

Showing all 3 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CAHMYPEL10.610944303
CAHMOLFM40.604942303
CAHMNIFK-AS10.514769603

For details and further investigation, click here