C9orf43

 

Full name: chromosome 9 open reading frame 43 Alias Symbol: MGC17358
Type: protein-coding gene Cytoband: 9q32
Entrez ID: 257169 HGNC ID: HGNC:23570 Ensembl Gene: ENSG00000157653 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of C9orf43:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 C9orf43 257169 1554280_a_at 0.0394 0.8738
GSE26886 C9orf43 257169 1554280_a_at 0.0945 0.3237
GSE45670 C9orf43 257169 1554280_a_at 0.1829 0.0930
GSE53622 C9orf43 257169 39338 0.1915 0.2546
GSE53624 C9orf43 257169 39338 0.3440 0.0215
GSE63941 C9orf43 257169 1554280_a_at 0.2246 0.5330
GSE77861 C9orf43 257169 1554280_a_at 0.0504 0.6735
SRP133303 C9orf43 257169 RNAseq 0.0243 0.9409
SRP159526 C9orf43 257169 RNAseq 0.9478 0.0750
TCGA C9orf43 257169 RNAseq 0.5973 0.0833

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by C9orf43 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of C9orf43:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 C9orf43 257169 4 10 16
GSE20123 C9orf43 257169 4 10 16
GSE43470 C9orf43 257169 4 3 36
GSE46452 C9orf43 257169 6 13 40
GSE47630 C9orf43 257169 3 16 21
GSE54993 C9orf43 257169 3 3 64
GSE54994 C9orf43 257169 9 10 34
GSE60625 C9orf43 257169 0 0 11
GSE74703 C9orf43 257169 4 3 29
GSE74704 C9orf43 257169 2 8 10
TCGA C9orf43 257169 26 22 48

Total number of gains: 65; Total number of losses: 98; Total Number of normals: 325.  

 

Somatic mutations of C9orf43:

 

Generating mutation plots.

 

Highly correlated genes for C9orf43:

 

Showing all 1 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
C9orf43BOLA20.568218303

For details and further investigation, click here