LINC00485

 

Full name: long intergenic non-protein coding RNA 485 Alias Symbol: 
Type: non-coding RNA Cytoband: 12q23.2
Entrez ID: 283432 HGNC ID: HGNC:27476 Ensembl Gene: ENSG00000258169 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00485:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00485 283432 1561222_at -0.0040 0.9881
GSE26886 LINC00485 283432 1561222_at 0.0032 0.9693
GSE45670 LINC00485 283432 1561222_at 0.0384 0.5132
GSE53622 LINC00485 283432 106239 -0.0462 0.7779
GSE53624 LINC00485 283432 27650 0.4022 0.0008
GSE63941 LINC00485 283432 1561222_at 0.0538 0.6339
GSE77861 LINC00485 283432 1561222_at -0.0552 0.5635
SRP133303 LINC00485 283432 RNAseq 0.5622 0.0133

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00485 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00485:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00485 283432 3 2 25
GSE20123 LINC00485 283432 3 2 25
GSE43470 LINC00485 283432 2 0 41
GSE46452 LINC00485 283432 9 1 49
GSE47630 LINC00485 283432 9 1 30
GSE54993 LINC00485 283432 0 5 65
GSE54994 LINC00485 283432 4 2 47
GSE60625 LINC00485 283432 0 0 11
GSE74703 LINC00485 283432 2 0 34
GSE74704 LINC00485 283432 1 2 17
TCGA LINC00485 283432 19 10 67

Total number of gains: 52; Total number of losses: 25; Total Number of normals: 411.  

 

Somatic mutations of LINC00485:

 

Generating mutation plots.

 

Highly correlated genes for LINC00485:

 

Showing all 1 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00485ZAR10.604282303

For details and further investigation, click here