SAA4

 

Full name: serum amyloid A4, constitutive Alias Symbol: C-SAA|CSAA
Type: protein-coding gene Cytoband: 11p15.1
Entrez ID: 6291 HGNC ID: HGNC:10516 Ensembl Gene: ENSG00000148965 OMIM ID: 104752
Drug and gene relationship at DGIdb

 

Expression of SAA4:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE53622 SAA4 6291 27818 0.0186 0.8484
GSE53624 SAA4 6291 27818 -0.1130 0.3791
GSE97050 SAA4 6291 A_23_P87238 0.7227 0.2110
TCGA SAA4 6291 RNAseq 3.4432 0.0001

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by SAA4 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of SAA4:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SAA4 6291 0 10 20
GSE20123 SAA4 6291 0 10 20
GSE43470 SAA4 6291 1 5 37
GSE46452 SAA4 6291 7 5 47
GSE47630 SAA4 6291 3 10 27
GSE54993 SAA4 6291 3 0 67
GSE54994 SAA4 6291 3 12 38
GSE60625 SAA4 6291 0 0 11
GSE74703 SAA4 6291 1 3 32
GSE74704 SAA4 6291 0 9 11
TCGA SAA4 6291 11 29 56

Total number of gains: 29; Total number of losses: 93; Total Number of normals: 366.  

 

Somatic mutations of SAA4:

 

Generating mutation plots.

 

Highly correlated genes for SAA4:

 

Showing all 1 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SAA4SAA20.597645403

For details and further investigation, click here