| Full name: serum amyloid A2 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 11p15.1 | ||
| Entrez ID: 6289 | HGNC ID: HGNC:10514 | Ensembl Gene: ENSG00000134339 | OMIM ID: 104751 |
| Drug and gene relationship at DGIdb | |||
Expression of SAA2:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE53622 | SAA2 | 6289 | 106894 | 0.1135 | 0.7607 | |
| GSE53624 | SAA2 | 6289 | 106894 | 0.0325 | 0.9283 | |
| GSE97050 | SAA2 | 6289 | A_33_P3408918 | 1.2215 | 0.0948 | |
| SRP064894 | SAA2 | 6289 | RNAseq | 0.0135 | 0.9818 | |
| SRP133303 | SAA2 | 6289 | RNAseq | 0.4429 | 0.0978 | |
| SRP159526 | SAA2 | 6289 | RNAseq | -0.3008 | 0.7621 | |
| SRP193095 | SAA2 | 6289 | RNAseq | 1.2792 | 0.0000 | |
| TCGA | SAA2 | 6289 | RNAseq | 1.9776 | 0.0000 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by SAA2 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SAA2:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SAA2 | 6289 | 0 | 10 | 20 | |
| GSE20123 | SAA2 | 6289 | 0 | 10 | 20 | |
| GSE43470 | SAA2 | 6289 | 1 | 5 | 37 | |
| GSE46452 | SAA2 | 6289 | 7 | 5 | 47 | |
| GSE47630 | SAA2 | 6289 | 3 | 10 | 27 | |
| GSE54993 | SAA2 | 6289 | 3 | 0 | 67 | |
| GSE54994 | SAA2 | 6289 | 3 | 12 | 38 | |
| GSE60625 | SAA2 | 6289 | 0 | 0 | 11 | |
| GSE74703 | SAA2 | 6289 | 1 | 3 | 32 | |
| GSE74704 | SAA2 | 6289 | 0 | 9 | 11 | |
| TCGA | SAA2 | 6289 | 11 | 29 | 56 |
Total number of gains: 29; Total number of losses: 93; Total Number of normals: 366.
Somatic mutations of SAA2:
Generating mutation plots.
Highly correlated genes for SAA2:
Showing all 5 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SAA2 | LTF | 0.660167 | 3 | 0 | 3 |
| SAA2 | MMP7 | 0.639868 | 3 | 0 | 3 |
| SAA2 | SAA4 | 0.597645 | 4 | 0 | 3 |
| SAA2 | C6orf58 | 0.53778 | 3 | 0 | 3 |
| SAA2 | STATH | 0.524267 | 3 | 0 | 3 |
For details and further investigation, click here
