HMGN3-AS1

 

Full name: HMGN3 antisense RNA 1 Alias Symbol: 
Type: non-coding RNA Cytoband: 6q14.1
Entrez ID: 100288198 HGNC ID: HGNC:48984 Ensembl Gene: ENSG00000270362 OMIM ID: 

 

Expression of HMGN3-AS1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 HMGN3-AS1 100288198 1559403_at 0.0571 0.8152
GSE26886 HMGN3-AS1 100288198 1559403_at -0.2428 0.0392
GSE45670 HMGN3-AS1 100288198 1559403_at 0.0821 0.3573
GSE63941 HMGN3-AS1 100288198 1559403_at -0.1379 0.4282
GSE77861 HMGN3-AS1 100288198 1559403_at -0.1188 0.1219
SRP064894 HMGN3-AS1 100288198 RNAseq 0.1280 0.6298
SRP133303 HMGN3-AS1 100288198 RNAseq 0.2955 0.2552
SRP159526 HMGN3-AS1 100288198 RNAseq 0.5538 0.1767
SRP193095 HMGN3-AS1 100288198 RNAseq 0.7790 0.0060
SRP219564 HMGN3-AS1 100288198 RNAseq -0.1140 0.7795

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Copy number change of HMGN3-AS1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 HMGN3-AS1 100288198 2 4 24
GSE20123 HMGN3-AS1 100288198 2 3 25
GSE43470 HMGN3-AS1 100288198 2 1 40
GSE46452 HMGN3-AS1 100288198 3 11 45
GSE47630 HMGN3-AS1 100288198 8 6 26
GSE54993 HMGN3-AS1 100288198 3 2 65
GSE54994 HMGN3-AS1 100288198 8 7 38
GSE60625 HMGN3-AS1 100288198 0 1 10
GSE74703 HMGN3-AS1 100288198 2 1 33
GSE74704 HMGN3-AS1 100288198 1 2 17

Total number of gains: 31; Total number of losses: 38; Total Number of normals: 323.  

 

Somatic mutations of HMGN3-AS1:

 

Generating mutation plots.

 

Highly correlated genes for HMGN3-AS1:

 

Showing all 2 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
HMGN3-AS1NEGR1-IT10.56338303
HMGN3-AS1CD3E0.5364503

For details and further investigation, click here