NEGR1-IT1

 

Full name: NEGR1 intronic transcript 1 Alias Symbol: 
Type: non-coding RNA Cytoband: 1p31.1
Entrez ID: 100852409 HGNC ID: HGNC:41432 Ensembl Gene: ENSG00000228853 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of NEGR1-IT1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 NEGR1-IT1 100852409 1563316_at 0.1071 0.7116
GSE26886 NEGR1-IT1 100852409 1563316_at -0.3081 0.0323
GSE45670 NEGR1-IT1 100852409 1563316_at 0.0166 0.8824
GSE63941 NEGR1-IT1 100852409 1563316_at -0.2033 0.1599
GSE77861 NEGR1-IT1 100852409 1563316_at -0.0816 0.3607

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Copy number change of NEGR1-IT1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 NEGR1-IT1 100852409 1 6 23
GSE20123 NEGR1-IT1 100852409 1 6 23
GSE43470 NEGR1-IT1 100852409 4 2 37
GSE46452 NEGR1-IT1 100852409 0 1 58
GSE47630 NEGR1-IT1 100852409 7 6 27
GSE54993 NEGR1-IT1 100852409 0 1 69
GSE54994 NEGR1-IT1 100852409 6 5 42
GSE60625 NEGR1-IT1 100852409 0 0 11
GSE74703 NEGR1-IT1 100852409 3 2 31
GSE74704 NEGR1-IT1 100852409 1 3 16

Total number of gains: 23; Total number of losses: 32; Total Number of normals: 337.  

 

Somatic mutations of NEGR1-IT1:

 

Generating mutation plots.

 

Highly correlated genes for NEGR1-IT1:

 

Showing all 13 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
NEGR1-IT1KRTAP17-10.645764303
NEGR1-IT1PRCD0.639964303
NEGR1-IT1BPIFA20.635986303
NEGR1-IT1KIR2DS20.633527303
NEGR1-IT1KRTAP1-50.597665303
NEGR1-IT1AHSP0.58366303
NEGR1-IT1KCNJ60.566668303
NEGR1-IT1TEX260.565552403
NEGR1-IT1HMGN3-AS10.56338303
NEGR1-IT1GPA330.542951303
NEGR1-IT1FAM124B0.523348403
NEGR1-IT1KCTD160.522859403
NEGR1-IT1IFNA140.516876503

For details and further investigation, click here