LINC00029

 

Full name: long intergenic non-protein coding RNA 29 Alias Symbol: bA305P22.4
Type: non-coding RNA Cytoband: 20q13.33
Entrez ID: 100144596 HGNC ID: HGNC:16184 Ensembl Gene: ENSG00000125514 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00029:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00029 100144596 231760_at 0.0438 0.8655
GSE26886 LINC00029 100144596 231760_at -0.0567 0.6518
GSE45670 LINC00029 100144596 231760_at 0.0705 0.3613
GSE53622 LINC00029 100144596 77863 0.3287 0.0078
GSE53624 LINC00029 100144596 77863 0.0837 0.4577
GSE63941 LINC00029 100144596 231760_at 0.0464 0.7828
GSE77861 LINC00029 100144596 231760_at -0.1636 0.0441

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00029 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00029:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00029 100144596 14 2 14
GSE20123 LINC00029 100144596 14 2 14
GSE43470 LINC00029 100144596 11 1 31
GSE46452 LINC00029 100144596 35 0 24
GSE47630 LINC00029 100144596 25 1 14
GSE54993 LINC00029 100144596 0 16 54
GSE54994 LINC00029 100144596 29 0 24
GSE60625 LINC00029 100144596 0 0 11
GSE74703 LINC00029 100144596 10 0 26
GSE74704 LINC00029 100144596 11 0 9
TCGA LINC00029 100144596 44 4 48

Total number of gains: 193; Total number of losses: 26; Total Number of normals: 269.  

 

Somatic mutations of LINC00029:

 

Generating mutation plots.

 

Highly correlated genes for LINC00029:

 

Showing all 3 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00029RNF1860.546144303
LINC00029SPATA120.532648403
LINC00029KRTAP11-10.517399503

For details and further investigation, click here