LINC00299

 

Full name: long intergenic non-protein coding RNA 299 Alias Symbol: FLJ45673
Type: non-coding RNA Cytoband: 2p25.1
Entrez ID: 339789 HGNC ID: HGNC:27940 Ensembl Gene: ENSG00000236790 OMIM ID: 

 

Expression of LINC00299:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00299 339789 1562717_at 0.1095 0.5538
GSE26886 LINC00299 339789 1562717_at -0.0455 0.7534
GSE45670 LINC00299 339789 1562717_at 0.1681 0.0258
GSE53622 LINC00299 339789 145582 0.2073 0.0924
GSE53624 LINC00299 339789 145582 0.0909 0.1791
GSE63941 LINC00299 339789 1562717_at 0.0607 0.7052
GSE77861 LINC00299 339789 1562717_at 0.0714 0.3723
SRP133303 LINC00299 339789 RNAseq -0.0330 0.9425

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00299 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00299:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00299 339789 8 2 20
GSE20123 LINC00299 339789 8 2 20
GSE43470 LINC00299 339789 2 1 40
GSE46452 LINC00299 339789 3 4 52
GSE47630 LINC00299 339789 7 0 33
GSE54993 LINC00299 339789 0 7 63
GSE54994 LINC00299 339789 11 0 42
GSE60625 LINC00299 339789 0 3 8
GSE74703 LINC00299 339789 2 0 34
GSE74704 LINC00299 339789 8 1 11
TCGA LINC00299 339789 35 4 57

Total number of gains: 84; Total number of losses: 24; Total Number of normals: 380.  

 

Somatic mutations of LINC00299:

 

Generating mutation plots.

 

Highly correlated genes for LINC00299:

 

Showing all 2 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00299TET30.698318303
LINC00299BRF20.538605303

For details and further investigation, click here