LINC00473

 

Full name: long intergenic non-protein coding RNA 473 Alias Symbol: bA142J11.1|LNC473
Type: non-coding RNA Cytoband: 6q27
Entrez ID: 90632 HGNC ID: HGNC:21160 Ensembl Gene: ENSG00000223414 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00473:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00473 90632 230251_at -0.0113 0.9769
GSE26886 LINC00473 90632 230251_at -0.0987 0.4601
GSE45670 LINC00473 90632 230251_at 0.0611 0.5823
GSE63941 LINC00473 90632 230251_at -3.2169 0.0002
GSE77861 LINC00473 90632 230251_at -0.0146 0.8778
SRP133303 LINC00473 90632 RNAseq -0.4218 0.2904
SRP193095 LINC00473 90632 RNAseq 0.7234 0.0093

Upregulated datasets: 0; Downregulated datasets: 1.  

 

Copy number change of LINC00473:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00473 90632 2 6 22
GSE20123 LINC00473 90632 2 6 22
GSE43470 LINC00473 90632 3 0 40
GSE46452 LINC00473 90632 3 10 46
GSE47630 LINC00473 90632 7 7 26
GSE54993 LINC00473 90632 4 4 62
GSE54994 LINC00473 90632 9 8 36
GSE60625 LINC00473 90632 1 1 9
GSE74703 LINC00473 90632 3 0 33
GSE74704 LINC00473 90632 1 3 16
TCGA LINC00473 90632 13 21 62

Total number of gains: 48; Total number of losses: 66; Total Number of normals: 374.  

 

Somatic mutations of LINC00473:

 

Generating mutation plots.

 

Highly correlated genes for LINC00473:

 

Showing all 3 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00473BTBD180.681496303
LINC00473ADAMTS90.674355303
LINC00473NPFF0.545033303

For details and further investigation, click here