LINC00879

 

Full name: long intergenic non-protein coding RNA 879 Alias Symbol: 
Type: non-coding RNA Cytoband: 3q11.2
Entrez ID: 255025 HGNC ID: HGNC:48566 Ensembl Gene: ENSG00000239589 OMIM ID: 

 

Expression of LINC00879:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00879 255025 1556406_at 0.0083 0.9779
GSE26886 LINC00879 255025 1556406_at -0.1296 0.2486
GSE45670 LINC00879 255025 1556406_at 0.1318 0.1370
GSE53622 LINC00879 255025 23656 0.2066 0.2623
GSE53624 LINC00879 255025 23656 0.0288 0.6923
GSE63941 LINC00879 255025 1556406_at -0.0434 0.7889
GSE77861 LINC00879 255025 1556406_at -0.0764 0.4152

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00879 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00879:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00879 255025 20 1 9
GSE20123 LINC00879 255025 19 1 10
GSE43470 LINC00879 255025 8 9 26
GSE46452 LINC00879 255025 5 15 39
GSE47630 LINC00879 255025 14 8 18
GSE54993 LINC00879 255025 4 3 63
GSE54994 LINC00879 255025 13 16 24
GSE60625 LINC00879 255025 0 6 5
GSE74703 LINC00879 255025 7 7 22
GSE74704 LINC00879 255025 13 1 6
TCGA LINC00879 255025 54 9 33

Total number of gains: 157; Total number of losses: 76; Total Number of normals: 255.  

 

Somatic mutations of LINC00879:

 

Generating mutation plots.

 

Highly correlated genes for LINC00879:

 

Showing all 4 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00879RS10.565207303
LINC00879DGCR120.546786303
LINC00879DSCR80.518873303
LINC00879RAG20.513591303

For details and further investigation, click here