SLC23A1

 

Full name: solute carrier family 23 member 1 Alias Symbol: YSPL3|SVCT1
Type: protein-coding gene Cytoband: 5q31.2
Entrez ID: 9963 HGNC ID: HGNC:10974 Ensembl Gene: ENSG00000170482 OMIM ID: 603790
Drug and gene relationship at DGIdb

 

Expression of SLC23A1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 SLC23A1 9963 223732_at 0.1111 0.6360
GSE26886 SLC23A1 9963 223732_at -0.0489 0.7035
GSE45670 SLC23A1 9963 223732_at 0.0555 0.6001
GSE53622 SLC23A1 9963 85163 -0.1077 0.4265
GSE53624 SLC23A1 9963 85163 -0.3590 0.0027
GSE63941 SLC23A1 9963 223732_at 0.1316 0.5162
GSE77861 SLC23A1 9963 223732_at 0.0132 0.9150
GSE97050 SLC23A1 9963 A_23_P21990 0.0388 0.8987
SRP133303 SLC23A1 9963 RNAseq -0.2108 0.4624
SRP159526 SLC23A1 9963 RNAseq -0.7536 0.0536
TCGA SLC23A1 9963 RNAseq -0.4650 0.2824

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by SLC23A1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of SLC23A1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SLC23A1 9963 3 11 16
GSE20123 SLC23A1 9963 4 11 15
GSE43470 SLC23A1 9963 4 7 32
GSE46452 SLC23A1 9963 0 27 32
GSE47630 SLC23A1 9963 0 21 19
GSE54993 SLC23A1 9963 9 1 60
GSE54994 SLC23A1 9963 2 14 37
GSE60625 SLC23A1 9963 0 0 11
GSE74703 SLC23A1 9963 3 5 28
GSE74704 SLC23A1 9963 3 5 12
TCGA SLC23A1 9963 5 36 55

Total number of gains: 33; Total number of losses: 138; Total Number of normals: 317.  

 

Somatic mutations of SLC23A1:

 

Generating mutation plots.

 

Highly correlated genes for SLC23A1:

 

Showing all 4 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SLC23A1MAMSTR0.613482303
SLC23A1KMO0.534982403
SLC23A1SLC25A450.532602403
SLC23A1SYT80.505171603

For details and further investigation, click here