SNHG6

 

Full name: small nucleolar RNA host gene 6 Alias Symbol: U87HG|HBII-276HG|NCRNA00058
Type: non-coding RNA Cytoband: 8q13.1
Entrez ID: 641638 HGNC ID: HGNC:32965 Ensembl Gene: ENSG00000245910 OMIM ID: 612215

 

Expression of SNHG6:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE53622 SNHG6 641638 107878 0.0838 0.3361
GSE53624 SNHG6 641638 18905 0.5421 0.0000
SRP007169 SNHG6 641638 RNAseq -0.1587 0.7449
SRP008496 SNHG6 641638 RNAseq 0.3246 0.3265
SRP064894 SNHG6 641638 RNAseq 0.3946 0.1777
SRP133303 SNHG6 641638 RNAseq 0.2413 0.2064
SRP159526 SNHG6 641638 RNAseq 0.2255 0.4070
SRP193095 SNHG6 641638 RNAseq 0.1851 0.2645
SRP219564 SNHG6 641638 RNAseq 0.5436 0.3511
TCGA SNHG6 641638 RNAseq 0.1664 0.0316

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by SNHG6 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of SNHG6:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SNHG6 641638 15 1 14
GSE20123 SNHG6 641638 16 1 13
GSE43470 SNHG6 641638 15 3 25
GSE46452 SNHG6 641638 20 2 37
GSE47630 SNHG6 641638 23 1 16
GSE54993 SNHG6 641638 1 18 51
GSE54994 SNHG6 641638 30 0 23
GSE60625 SNHG6 641638 0 4 7
GSE74703 SNHG6 641638 13 2 21
GSE74704 SNHG6 641638 11 0 9
TCGA SNHG6 641638 49 4 43

Total number of gains: 193; Total number of losses: 36; Total Number of normals: 259.  

 

Somatic mutations of SNHG6:

 

Generating mutation plots.

 

Highly correlated genes for SNHG6:

 

Showing all 2 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SNHG6RPS200.597171303
SNHG6RPL70.556302303

For details and further investigation, click here