CASC16

 

Full name: cancer susceptibility 16 Alias Symbol: LOC643714
Type: non-coding RNA Cytoband: 16q12.1-q12.2
Entrez ID: 643714 HGNC ID: HGNC:48608 Ensembl Gene: ENSG00000249231 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of CASC16:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CASC16 643714 238211_at 0.0736 0.7753
GSE26886 CASC16 643714 238211_at 0.0352 0.7443
GSE45670 CASC16 643714 238211_at 0.0385 0.6876
GSE53622 CASC16 643714 69004 0.0034 0.9811
GSE53624 CASC16 643714 69004 -0.0944 0.4107
GSE63941 CASC16 643714 238211_at 0.1381 0.4222
GSE77861 CASC16 643714 238211_at 0.0553 0.6719

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by CASC16 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of CASC16:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CASC16 643714 3 0 27
GSE20123 CASC16 643714 3 0 27
GSE43470 CASC16 643714 2 7 34
GSE46452 CASC16 643714 38 1 20
GSE47630 CASC16 643714 11 7 22
GSE54993 CASC16 643714 2 5 63
GSE54994 CASC16 643714 6 11 36
GSE60625 CASC16 643714 4 0 7
GSE74703 CASC16 643714 2 4 30
GSE74704 CASC16 643714 3 0 17
TCGA CASC16 643714 26 11 59

Total number of gains: 100; Total number of losses: 46; Total Number of normals: 342.  

 

Somatic mutations of CASC16:

 

Generating mutation plots.

 

Highly correlated genes for CASC16:

 

Showing all 7 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CASC16CXCL140.631408303
CASC16URGCP0.611302303
CASC16DUSP70.590392303
CASC16WDR910.559347303
CASC16GM2A0.545349303
CASC16C11orf720.540948403
CASC16HABP20.510513403

For details and further investigation, click here