LINC00558

 

Full name: long intergenic non-protein coding RNA 558 Alias Symbol: 
Type: non-coding RNA Cytoband: 13q14.3
Entrez ID: 100861552 HGNC ID: HGNC:43702 Ensembl Gene: ENSG00000261517 OMIM ID: 

 

Expression of LINC00558:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00558 100861552 1556884_a_at -0.0213 0.9405
GSE26886 LINC00558 100861552 1556884_a_at 0.0951 0.2794
GSE45670 LINC00558 100861552 1556884_a_at 0.0193 0.7947
GSE63941 LINC00558 100861552 1556884_a_at 0.0639 0.5784
GSE77861 LINC00558 100861552 1556884_a_at -0.0011 0.9898

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Copy number change of LINC00558:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00558 100861552 1 14 15
GSE20123 LINC00558 100861552 1 13 16
GSE43470 LINC00558 100861552 1 12 30
GSE46452 LINC00558 100861552 0 32 27
GSE47630 LINC00558 100861552 2 27 11
GSE54993 LINC00558 100861552 12 2 56
GSE54994 LINC00558 100861552 2 15 36
GSE60625 LINC00558 100861552 0 3 8
GSE74703 LINC00558 100861552 1 10 25
GSE74704 LINC00558 100861552 0 11 9
TCGA LINC00558 100861552 10 34 52

Total number of gains: 30; Total number of losses: 173; Total Number of normals: 285.  

 

Somatic mutations of LINC00558:

 

Generating mutation plots.

 

Highly correlated genes for LINC00558:

 

Showing all 6 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00558ZNF4170.638366303
LINC00558FUT8-AS10.634259303
LINC00558DNAJC220.602438303
LINC00558BRSK10.580099303
LINC00558M1AP0.571307303
LINC00558NRL0.566174403

For details and further investigation, click here