RAPGEF4-AS1

 

Full name: RAPGEF4 antisense RNA 1 Alias Symbol: 
Type: non-coding RNA Cytoband: 2q31.1
Entrez ID: 91149 HGNC ID: HGNC:28081 Ensembl Gene: ENSG00000228016 OMIM ID: 

 

Expression of RAPGEF4-AS1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 RAPGEF4-AS1 91149 1563528_at -0.0250 0.9312
GSE26886 RAPGEF4-AS1 91149 1563528_at -0.1522 0.1577
GSE45670 RAPGEF4-AS1 91149 1563528_at 0.0999 0.1846
GSE53622 RAPGEF4-AS1 91149 84557 0.4266 0.0001
GSE53624 RAPGEF4-AS1 91149 84557 0.6772 0.0000
GSE63941 RAPGEF4-AS1 91149 1563528_at 0.0326 0.8555
GSE77861 RAPGEF4-AS1 91149 1563528_at -0.0133 0.9397
SRP133303 RAPGEF4-AS1 91149 RNAseq 0.8781 0.0011

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by RAPGEF4-AS1 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of RAPGEF4-AS1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 RAPGEF4-AS1 91149 10 0 20
GSE20123 RAPGEF4-AS1 91149 10 0 20
GSE43470 RAPGEF4-AS1 91149 5 1 37
GSE46452 RAPGEF4-AS1 91149 1 4 54
GSE47630 RAPGEF4-AS1 91149 5 3 32
GSE54993 RAPGEF4-AS1 91149 0 5 65
GSE54994 RAPGEF4-AS1 91149 12 3 38
GSE60625 RAPGEF4-AS1 91149 0 3 8
GSE74703 RAPGEF4-AS1 91149 4 1 31
GSE74704 RAPGEF4-AS1 91149 6 0 14

Total number of gains: 53; Total number of losses: 20; Total Number of normals: 319.  

 

Somatic mutations of RAPGEF4-AS1:

 

Generating mutation plots.

 

Highly correlated genes for RAPGEF4-AS1:

 

Showing all 4 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
RAPGEF4-AS1XIRP10.673753303
RAPGEF4-AS1MDH1B0.572675403
RAPGEF4-AS1ASCL10.541307403
RAPGEF4-AS1C11orf720.519467303

For details and further investigation, click here