CSMD3

 

Full name: CUB and Sushi multiple domains 3 Alias Symbol: 
Type: protein-coding gene Cytoband: 8q23.3
Entrez ID: 114788 HGNC ID: HGNC:19291 Ensembl Gene: ENSG00000164796 OMIM ID: 608399
Drug and gene relationship at DGIdb

 

Expression of CSMD3:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CSMD3 114788 240228_at -0.2101 0.3855
GSE26886 CSMD3 114788 240228_at 0.0894 0.3772
GSE45670 CSMD3 114788 240228_at 0.0942 0.7646
GSE53622 CSMD3 114788 4504 -0.1724 0.4300
GSE53624 CSMD3 114788 4504 1.1431 0.0000
GSE63941 CSMD3 114788 240228_at 0.1392 0.4223
GSE77861 CSMD3 114788 240228_at -0.1452 0.2095
TCGA CSMD3 114788 RNAseq -0.8520 0.2704

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by CSMD3 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of CSMD3:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CSMD3 114788 15 0 15
GSE20123 CSMD3 114788 16 0 14
GSE43470 CSMD3 114788 22 0 21
GSE46452 CSMD3 114788 25 0 34
GSE47630 CSMD3 114788 24 0 16
GSE54993 CSMD3 114788 0 20 50
GSE54994 CSMD3 114788 37 1 15
GSE60625 CSMD3 114788 0 6 5
GSE74703 CSMD3 114788 19 0 17
GSE74704 CSMD3 114788 10 0 10
TCGA CSMD3 114788 63 2 31

Total number of gains: 231; Total number of losses: 29; Total Number of normals: 228.  

 

Somatic mutations of CSMD3:

 

Generating mutation plots.

 

Highly correlated genes for CSMD3:

 

Showing all 7 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CSMD3MROH70.677278303
CSMD3OR5H10.646232303
CSMD3RPL34-AS10.636429303
CSMD3MEGF110.614589303
CSMD3GALK10.587663303
CSMD3EIF4E30.575549303
CSMD3UMOD0.568181303

For details and further investigation, click here