LINC00052

 

Full name: long intergenic non-protein coding RNA 52 Alias Symbol: FLJ31461
Type: non-coding RNA Cytoband: 15q25.3
Entrez ID: 145978 HGNC ID: HGNC:26455 Ensembl Gene: ENSG00000259527 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00052:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00052 145978 1553226_at -0.0732 0.8055
GSE26886 LINC00052 145978 1553226_at 0.0397 0.7527
GSE45670 LINC00052 145978 1553226_at 0.0839 0.3761
GSE53622 LINC00052 145978 11440 0.4558 0.0000
GSE53624 LINC00052 145978 11440 0.6049 0.0000
GSE63941 LINC00052 145978 1553226_at 0.3399 0.1497
GSE77861 LINC00052 145978 1553226_at -0.0096 0.9544

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00052 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00052:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00052 145978 7 1 22
GSE20123 LINC00052 145978 7 1 22
GSE43470 LINC00052 145978 5 4 34
GSE46452 LINC00052 145978 3 7 49
GSE47630 LINC00052 145978 8 10 22
GSE54993 LINC00052 145978 4 6 60
GSE54994 LINC00052 145978 7 6 40
GSE60625 LINC00052 145978 4 0 7
GSE74703 LINC00052 145978 4 3 29
GSE74704 LINC00052 145978 4 1 15
TCGA LINC00052 145978 16 13 67

Total number of gains: 69; Total number of losses: 52; Total Number of normals: 367.  

 

Somatic mutations of LINC00052:

 

Generating mutation plots.

 

Highly correlated genes for LINC00052:

 

Showing all 7 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00052CHRM50.685034303
LINC00052C20orf2030.637589303
LINC00052LHX30.619425303
LINC00052ABHD10.59522403
LINC00052OR51B40.554403303
LINC00052ITIH20.533716503
LINC00052LINC011810.510682403

For details and further investigation, click here