LINC00343

 

Full name: long intergenic non-protein coding RNA 343 Alias Symbol: 
Type: non-coding RNA Cytoband: 13q33.2
Entrez ID: 144920 HGNC ID: HGNC:42500 Ensembl Gene: ENSG00000226620 OMIM ID: 

 

Expression of LINC00343:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00343 144920 1561540_at -0.0168 0.9486
GSE26886 LINC00343 144920 1561540_at -0.1078 0.2377
GSE45670 LINC00343 144920 1561540_at 0.0691 0.2998
GSE53622 LINC00343 144920 6204 0.2778 0.0594
GSE53624 LINC00343 144920 69278 0.5487 0.0000
GSE63941 LINC00343 144920 1561540_at 0.0189 0.9104
GSE77861 LINC00343 144920 1561540_at -0.0779 0.3685
SRP133303 LINC00343 144920 RNAseq -0.1113 0.7375

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00343 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00343:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00343 144920 6 10 14
GSE20123 LINC00343 144920 6 9 15
GSE43470 LINC00343 144920 4 11 28
GSE46452 LINC00343 144920 1 31 27
GSE47630 LINC00343 144920 3 26 11
GSE54993 LINC00343 144920 11 4 55
GSE54994 LINC00343 144920 8 8 37
GSE60625 LINC00343 144920 0 3 8
GSE74703 LINC00343 144920 3 9 24
GSE74704 LINC00343 144920 4 9 7
TCGA LINC00343 144920 15 35 46

Total number of gains: 61; Total number of losses: 155; Total Number of normals: 272.  

 

Somatic mutations of LINC00343:

 

Generating mutation plots.

 

Highly correlated genes for LINC00343:

 

Showing all 7 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00343SHPK0.622148303
LINC00343DEFA40.612718303
LINC00343GPR750.606564303
LINC00343FAM181A-AS10.541804403
LINC00343OR2C10.53882403
LINC00343PDYN0.520035403
LINC00343LINC000510.500051503

For details and further investigation, click here