LINC00856

 

Full name: long intergenic non-protein coding RNA 856 Alias Symbol: 
Type: non-coding RNA Cytoband: 10q22.3
Entrez ID: 100132987 HGNC ID: HGNC:45111 Ensembl Gene: ENSG00000230417 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00856:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00856 100132987 1556754_at 0.0067 0.9862
GSE26886 LINC00856 100132987 1556754_at 0.1440 0.2229
GSE45670 LINC00856 100132987 1556754_at 0.0432 0.6482
GSE63941 LINC00856 100132987 1556754_at -0.0646 0.7055
GSE77861 LINC00856 100132987 1556754_at -0.1823 0.0660
SRP133303 LINC00856 100132987 RNAseq 0.3334 0.0995

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Copy number change of LINC00856:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00856 100132987 2 5 23
GSE20123 LINC00856 100132987 2 4 24
GSE43470 LINC00856 100132987 1 7 35
GSE46452 LINC00856 100132987 0 11 48
GSE47630 LINC00856 100132987 2 14 24
GSE54993 LINC00856 100132987 7 0 63
GSE54994 LINC00856 100132987 1 11 41
GSE60625 LINC00856 100132987 0 0 11
GSE74703 LINC00856 100132987 1 4 31
GSE74704 LINC00856 100132987 1 2 17
TCGA LINC00856 100132987 10 24 62

Total number of gains: 27; Total number of losses: 82; Total Number of normals: 379.  

 

Somatic mutations of LINC00856:

 

Generating mutation plots.

 

Highly correlated genes for LINC00856:

 

Showing all 7 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00856VWA5B20.636463303
LINC00856BRS30.599605303
LINC00856APOA50.596021403
LINC00856NLRP90.588841303
LINC00856TMEM1300.587629403
LINC00856CALCA0.57874403
LINC00856MIR7-3HG0.53123403

For details and further investigation, click here