LINC00290

 

Full name: long intergenic non-protein coding RNA 290 Alias Symbol: 
Type: non-coding RNA Cytoband: 4q34.3
Entrez ID: 728081 HGNC ID: HGNC:38515 Ensembl Gene: ENSG00000248197 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00290:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00290 728081 1556099_at 0.0114 0.9684
GSE26886 LINC00290 728081 1556099_at -0.0848 0.3570
GSE45670 LINC00290 728081 1556099_at 0.1109 0.0983
GSE53622 LINC00290 728081 85518 -0.1894 0.2039
GSE53624 LINC00290 728081 64387 0.2330 0.0236
GSE63941 LINC00290 728081 1556099_at 0.0279 0.8249
GSE77861 LINC00290 728081 1556099_at -0.0973 0.3517

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00290 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00290:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00290 728081 2 10 18
GSE20123 LINC00290 728081 2 10 18
GSE43470 LINC00290 728081 0 14 29
GSE46452 LINC00290 728081 1 36 22
GSE47630 LINC00290 728081 0 22 18
GSE54993 LINC00290 728081 10 0 60
GSE54994 LINC00290 728081 2 12 39
GSE60625 LINC00290 728081 0 0 11
GSE74703 LINC00290 728081 0 12 24
GSE74704 LINC00290 728081 1 5 14
TCGA LINC00290 728081 11 35 50

Total number of gains: 29; Total number of losses: 156; Total Number of normals: 303.  

 

Somatic mutations of LINC00290:

 

Generating mutation plots.

 

Highly correlated genes for LINC00290:

 

Showing all 8 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00290HUS1B0.65514303
LINC00290ZNF1350.646405403
LINC00290SPAG11A0.613895303
LINC00290LINC003540.595423303
LINC00290KLRC40.581089303
LINC00290ODF40.525264303
LINC00290DGCR6L0.517217403
LINC00290OR7E240.505908403

For details and further investigation, click here