LINC00993

 

Full name: long intergenic non-protein coding RNA 993 Alias Symbol: TCONS_l2_00002973
Type: non-coding RNA Cytoband: 10p11.21
Entrez ID: 101929520 HGNC ID: HGNC:48948 Ensembl Gene: ENSG00000235687 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00993:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00993 101929520 237339_at -0.0464 0.9011
GSE26886 LINC00993 101929520 237339_at -0.0328 0.7710
GSE45670 LINC00993 101929520 237339_at -0.1182 0.1900
GSE53622 LINC00993 101929520 22827 -0.8219 0.0000
GSE53624 LINC00993 101929520 22827 -0.8486 0.0000
GSE63941 LINC00993 101929520 237339_at -0.1457 0.2477
GSE77861 LINC00993 101929520 237339_at -0.0408 0.6684

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00993 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00993:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00993 101929520 3 6 21
GSE20123 LINC00993 101929520 3 5 22
GSE43470 LINC00993 101929520 3 3 37
GSE46452 LINC00993 101929520 0 13 46
GSE47630 LINC00993 101929520 5 11 24
GSE54993 LINC00993 101929520 9 0 61
GSE54994 LINC00993 101929520 3 9 41
GSE60625 LINC00993 101929520 0 0 11
GSE74703 LINC00993 101929520 2 1 33
GSE74704 LINC00993 101929520 0 4 16

Total number of gains: 28; Total number of losses: 52; Total Number of normals: 312.  

 

Somatic mutations of LINC00993:

 

Generating mutation plots.

 

Highly correlated genes for LINC00993:

 

Showing all 6 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00993ELAVL40.624788404
LINC00993NHLRC40.617481403
LINC00993CLEC12B0.606898303
LINC00993KCNA70.603032303
LINC00993FGF50.559356403
LINC00993SYT120.530031303

For details and further investigation, click here