LINC01197

 

Full name: long intergenic non-protein coding RNA 1197 Alias Symbol: 
Type: non-coding RNA Cytoband: 15q26.2
Entrez ID: 400456 HGNC ID: HGNC:49597 Ensembl Gene: ENSG00000248441 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC01197:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC01197 400456 1562901_at -0.0633 0.8103
GSE26886 LINC01197 400456 1562901_at -0.0751 0.5058
GSE45670 LINC01197 400456 1562901_at 0.0587 0.4112
GSE53622 LINC01197 400456 32618 1.3724 0.0000
GSE53624 LINC01197 400456 32618 1.4338 0.0000
GSE63941 LINC01197 400456 1562901_at 0.2135 0.1965
GSE77861 LINC01197 400456 1562901_at -0.0134 0.9022
SRP133303 LINC01197 400456 RNAseq -1.2979 0.0188

Upregulated datasets: 2; Downregulated datasets: 1.  

 

Survival by LINC01197 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC01197:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC01197 400456 6 2 22
GSE20123 LINC01197 400456 6 2 22
GSE43470 LINC01197 400456 4 4 35
GSE46452 LINC01197 400456 3 7 49
GSE47630 LINC01197 400456 9 10 21
GSE54993 LINC01197 400456 4 6 60
GSE54994 LINC01197 400456 9 7 37
GSE60625 LINC01197 400456 4 0 7
GSE74703 LINC01197 400456 3 3 30
GSE74704 LINC01197 400456 3 3 14

Total number of gains: 51; Total number of losses: 44; Total Number of normals: 297.  

 

Somatic mutations of LINC01197:

 

Generating mutation plots.

 

Highly correlated genes for LINC01197:

 

Showing all 6 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC01197LINC002210.720575303
LINC01197SEMG10.665433303
LINC01197DSCR80.617925303
LINC01197FAM222A-AS10.56663303
LINC01197PCA30.549729303
LINC01197L2HGDH0.507764503

For details and further investigation, click here