| Full name: long intergenic non-protein coding RNA 221 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 14q32.33 | ||
| Entrez ID: 338005 | HGNC ID: HGNC:20169 | Ensembl Gene: ENSG00000270816 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00221:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00221 | 338005 | 1564601_at | -0.0090 | 0.9776 | |
| GSE26886 | LINC00221 | 338005 | 1564601_at | 0.0706 | 0.4924 | |
| GSE45670 | LINC00221 | 338005 | 1564601_at | 0.1464 | 0.0885 | |
| GSE53622 | LINC00221 | 338005 | 54829 | 0.5283 | 0.0161 | |
| GSE53624 | LINC00221 | 338005 | 54829 | 0.7886 | 0.0000 | |
| GSE63941 | LINC00221 | 338005 | 1564601_at | 0.0714 | 0.5403 | |
| GSE77861 | LINC00221 | 338005 | 1564601_at | -0.0692 | 0.5590 | |
| SRP133303 | LINC00221 | 338005 | RNAseq | -0.0423 | 0.7513 | |
| SRP193095 | LINC00221 | 338005 | RNAseq | -0.1067 | 0.4677 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00221 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00221:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00221 | 338005 | 10 | 3 | 17 | |
| GSE20123 | LINC00221 | 338005 | 10 | 2 | 18 | |
| GSE43470 | LINC00221 | 338005 | 6 | 3 | 34 | |
| GSE46452 | LINC00221 | 338005 | 18 | 4 | 37 | |
| GSE47630 | LINC00221 | 338005 | 10 | 10 | 20 | |
| GSE54993 | LINC00221 | 338005 | 4 | 11 | 55 | |
| GSE54994 | LINC00221 | 338005 | 21 | 4 | 28 | |
| GSE60625 | LINC00221 | 338005 | 0 | 11 | 0 | |
| GSE74703 | LINC00221 | 338005 | 4 | 3 | 29 | |
| GSE74704 | LINC00221 | 338005 | 5 | 2 | 13 | |
| TCGA | LINC00221 | 338005 | 31 | 18 | 47 |
Total number of gains: 119; Total number of losses: 71; Total Number of normals: 298.
Somatic mutations of LINC00221:
Generating mutation plots.
Highly correlated genes for LINC00221:
Showing top 20/52 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00221 | LINC01197 | 0.720575 | 3 | 0 | 3 |
| LINC00221 | LINC01432 | 0.694227 | 3 | 0 | 3 |
| LINC00221 | CCIN | 0.691553 | 3 | 0 | 3 |
| LINC00221 | ALPI | 0.679962 | 3 | 0 | 3 |
| LINC00221 | ASPHD2 | 0.650149 | 3 | 0 | 3 |
| LINC00221 | RS1 | 0.64993 | 3 | 0 | 3 |
| LINC00221 | RAX2 | 0.647534 | 3 | 0 | 3 |
| LINC00221 | FAM222A-AS1 | 0.643599 | 4 | 0 | 4 |
| LINC00221 | NPPB | 0.64152 | 4 | 0 | 3 |
| LINC00221 | OR3A1 | 0.64122 | 3 | 0 | 3 |
| LINC00221 | BTNL2 | 0.640864 | 3 | 0 | 3 |
| LINC00221 | COX6B2 | 0.621713 | 3 | 0 | 3 |
| LINC00221 | IGLON5 | 0.615285 | 4 | 0 | 3 |
| LINC00221 | THRA | 0.609765 | 3 | 0 | 3 |
| LINC00221 | LINC00661 | 0.595283 | 3 | 0 | 3 |
| LINC00221 | LINC01122 | 0.593495 | 5 | 0 | 3 |
| LINC00221 | SLC6A3 | 0.590397 | 4 | 0 | 3 |
| LINC00221 | ALPP | 0.589093 | 4 | 0 | 3 |
| LINC00221 | FGF22 | 0.582635 | 3 | 0 | 3 |
| LINC00221 | NLRP4 | 0.578524 | 3 | 0 | 3 |
For details and further investigation, click here
