PTPRG-AS1

 

Full name: PTPRG antisense RNA 1 Alias Symbol: 
Type: non-coding RNA Cytoband: 3p14.2
Entrez ID: 100506994 HGNC ID: HGNC:44638 Ensembl Gene: ENSG00000241472 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of PTPRG-AS1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 PTPRG-AS1 100506994 232242_at 0.3918 0.4004
GSE26886 PTPRG-AS1 100506994 232242_at -0.0550 0.5594
GSE45670 PTPRG-AS1 100506994 232242_at 0.0921 0.6704
GSE53622 PTPRG-AS1 100506994 66418 0.3218 0.0042
GSE53624 PTPRG-AS1 100506994 20041 0.5666 0.0000
GSE63941 PTPRG-AS1 100506994 232242_at 0.1439 0.7495
GSE77861 PTPRG-AS1 100506994 232242_at 0.0758 0.4965
SRP133303 PTPRG-AS1 100506994 RNAseq 0.3149 0.2223
SRP193095 PTPRG-AS1 100506994 RNAseq 0.2729 0.0966
SRP219564 PTPRG-AS1 100506994 RNAseq -0.1555 0.7243

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by PTPRG-AS1 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of PTPRG-AS1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 PTPRG-AS1 100506994 0 18 12
GSE20123 PTPRG-AS1 100506994 0 18 12
GSE43470 PTPRG-AS1 100506994 0 19 24
GSE46452 PTPRG-AS1 100506994 2 17 40
GSE47630 PTPRG-AS1 100506994 1 24 15
GSE54993 PTPRG-AS1 100506994 5 2 63
GSE54994 PTPRG-AS1 100506994 1 32 20
GSE60625 PTPRG-AS1 100506994 3 1 7
GSE74703 PTPRG-AS1 100506994 0 16 20
GSE74704 PTPRG-AS1 100506994 0 12 8

Total number of gains: 12; Total number of losses: 159; Total Number of normals: 221.  

 

Somatic mutations of PTPRG-AS1:

 

Generating mutation plots.

 

Highly correlated genes for PTPRG-AS1:

 

Showing all 9 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
PTPRG-AS1TTC60.699888303
PTPRG-AS1USP490.647319303
PTPRG-AS1CECR30.552908303
PTPRG-AS1FKBP70.547744303
PTPRG-AS1RAD51AP10.536244303
PTPRG-AS1SLBP0.52927303
PTPRG-AS1BFAR0.528712403
PTPRG-AS1TASP10.517107303
PTPRG-AS1EIF5A20.502562403

For details and further investigation, click here