ZNF541

 

Full name: zinc finger protein 541 Alias Symbol: DKFZp434I1930
Type: protein-coding gene Cytoband: 19q13.33
Entrez ID: 84215 HGNC ID: HGNC:25294 Ensembl Gene: ENSG00000118156 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of ZNF541:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 ZNF541 84215 232604_at -0.0334 0.9026
GSE26886 ZNF541 84215 232604_at -0.0368 0.8523
GSE45670 ZNF541 84215 232604_at -0.0133 0.9266
GSE53622 ZNF541 84215 113048 0.1603 0.3954
GSE53624 ZNF541 84215 113048 -0.1900 0.1285
GSE63941 ZNF541 84215 232604_at -0.1893 0.4962
GSE77861 ZNF541 84215 232604_at -0.0944 0.4731
TCGA ZNF541 84215 RNAseq 0.8026 0.1850

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by ZNF541 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of ZNF541:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 ZNF541 84215 4 4 22
GSE20123 ZNF541 84215 4 3 23
GSE43470 ZNF541 84215 3 10 30
GSE46452 ZNF541 84215 45 1 13
GSE47630 ZNF541 84215 8 7 25
GSE54993 ZNF541 84215 17 4 49
GSE54994 ZNF541 84215 4 14 35
GSE60625 ZNF541 84215 9 0 2
GSE74703 ZNF541 84215 3 7 26
GSE74704 ZNF541 84215 4 1 15
TCGA ZNF541 84215 14 18 64

Total number of gains: 115; Total number of losses: 69; Total Number of normals: 304.  

 

Somatic mutations of ZNF541:

 

Generating mutation plots.

 

Highly correlated genes for ZNF541:

 

Showing all 6 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
ZNF541CNNM10.568741303
ZNF541SYCN0.554187303
ZNF541PYHIN10.524659303
ZNF541RPH3AL0.523754403
ZNF541SLC17A20.509962403
ZNF541SNORA74A0.502186503

For details and further investigation, click here