| Full name: syncollin | Alias Symbol: SYL|FLJ27441 | ||
| Type: protein-coding gene | Cytoband: 19q13.2 | ||
| Entrez ID: 342898 | HGNC ID: HGNC:18442 | Ensembl Gene: ENSG00000179751 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of SYCN:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SYCN | 342898 | 229995_at | -0.0287 | 0.9264 | |
| GSE26886 | SYCN | 342898 | 229995_at | 0.0787 | 0.5372 | |
| GSE45670 | SYCN | 342898 | 229995_at | 0.0873 | 0.3253 | |
| GSE53622 | SYCN | 342898 | 65341 | 0.6173 | 0.0000 | |
| GSE53624 | SYCN | 342898 | 65341 | 0.5253 | 0.0000 | |
| GSE63941 | SYCN | 342898 | 229995_at | 0.1375 | 0.2973 | |
| GSE77861 | SYCN | 342898 | 229995_at | -0.0455 | 0.6964 | |
| GSE97050 | SYCN | 342898 | A_24_P39928 | 0.1343 | 0.5862 | |
| TCGA | SYCN | 342898 | RNAseq | -3.4537 | 0.0001 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by SYCN expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SYCN:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SYCN | 342898 | 7 | 4 | 19 | |
| GSE20123 | SYCN | 342898 | 7 | 3 | 20 | |
| GSE43470 | SYCN | 342898 | 4 | 11 | 28 | |
| GSE46452 | SYCN | 342898 | 47 | 2 | 10 | |
| GSE47630 | SYCN | 342898 | 9 | 5 | 26 | |
| GSE54993 | SYCN | 342898 | 17 | 3 | 50 | |
| GSE54994 | SYCN | 342898 | 7 | 9 | 37 | |
| GSE60625 | SYCN | 342898 | 9 | 0 | 2 | |
| GSE74703 | SYCN | 342898 | 4 | 7 | 25 | |
| GSE74704 | SYCN | 342898 | 7 | 1 | 12 | |
| TCGA | SYCN | 342898 | 14 | 16 | 66 |
Total number of gains: 132; Total number of losses: 61; Total Number of normals: 295.
Somatic mutations of SYCN:
Generating mutation plots.
Highly correlated genes for SYCN:
Showing top 20/281 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SYCN | KRTAP5-7 | 0.877212 | 3 | 0 | 3 |
| SYCN | KRTAP10-12 | 0.848166 | 3 | 0 | 3 |
| SYCN | F2RL3 | 0.830252 | 3 | 0 | 3 |
| SYCN | XRCC2 | 0.820729 | 3 | 0 | 3 |
| SYCN | BMP8B | 0.795387 | 3 | 0 | 3 |
| SYCN | FOXE3 | 0.791884 | 3 | 0 | 3 |
| SYCN | DCDC1 | 0.782753 | 3 | 0 | 3 |
| SYCN | GCM2 | 0.780028 | 3 | 0 | 3 |
| SYCN | GHSR | 0.775963 | 3 | 0 | 3 |
| SYCN | TNFAIP8L1 | 0.770347 | 3 | 0 | 3 |
| SYCN | ALPP | 0.770286 | 3 | 0 | 3 |
| SYCN | STRC | 0.769654 | 3 | 0 | 3 |
| SYCN | BFSP2-AS1 | 0.759209 | 3 | 0 | 3 |
| SYCN | PLA2G2C | 0.758051 | 3 | 0 | 3 |
| SYCN | MRPS16 | 0.750625 | 3 | 0 | 3 |
| SYCN | C19orf44 | 0.746131 | 3 | 0 | 3 |
| SYCN | OR2A5 | 0.736151 | 3 | 0 | 3 |
| SYCN | OR4D6 | 0.730775 | 3 | 0 | 3 |
| SYCN | DEFB128 | 0.729874 | 3 | 0 | 3 |
| SYCN | NBPF3 | 0.725383 | 3 | 0 | 3 |
For details and further investigation, click here
