CNTNAP4

 

Full name: contactin associated protein like 4 Alias Symbol: CASPR4|KIAA1763
Type: protein-coding gene Cytoband: 16q23.1
Entrez ID: 85445 HGNC ID: HGNC:18747 Ensembl Gene: ENSG00000152910 OMIM ID: 610518

 

Expression of CNTNAP4:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CNTNAP4 85445 232388_at 0.2025 0.6242
GSE26886 CNTNAP4 85445 232388_at 0.1248 0.5395
GSE45670 CNTNAP4 85445 232388_at 0.1217 0.4639
GSE53622 CNTNAP4 85445 160358 0.1258 0.4582
GSE53624 CNTNAP4 85445 160358 -0.1377 0.3802
GSE63941 CNTNAP4 85445 232388_at -0.2145 0.3209
GSE77861 CNTNAP4 85445 232388_at -0.0413 0.7192
TCGA CNTNAP4 85445 RNAseq 0.7811 0.4983

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by CNTNAP4 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of CNTNAP4:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CNTNAP4 85445 4 1 25
GSE20123 CNTNAP4 85445 4 1 25
GSE43470 CNTNAP4 85445 2 7 34
GSE46452 CNTNAP4 85445 37 2 20
GSE47630 CNTNAP4 85445 11 8 21
GSE54993 CNTNAP4 85445 2 4 64
GSE54994 CNTNAP4 85445 7 11 35
GSE60625 CNTNAP4 85445 4 0 7
GSE74703 CNTNAP4 85445 2 5 29
GSE74704 CNTNAP4 85445 2 1 17
TCGA CNTNAP4 85445 25 16 55

Total number of gains: 100; Total number of losses: 56; Total Number of normals: 332.  

 

Somatic mutations of CNTNAP4:

 

Generating mutation plots.

 

Highly correlated genes for CNTNAP4:

 

Showing all 7 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CNTNAP4LINC009650.637332303
CNTNAP4LCE1E0.612695303
CNTNAP4MB0.611993303
CNTNAP4CELF50.60202303
CNTNAP4VAX20.598005303
CNTNAP4ZFHX4-AS10.582167303
CNTNAP4SLC6A190.577028303

For details and further investigation, click here