LINC00535

 

Full name: long intergenic non-protein coding RNA 535 Alias Symbol: 
Type: non-coding RNA Cytoband: 8q22.1
Entrez ID: 642924 HGNC ID: HGNC:43644 Ensembl Gene: ENSG00000246662 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00535:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00535 642924 1561423_at -0.0324 0.9312
GSE26886 LINC00535 642924 238244_at 0.1981 0.0499
GSE45670 LINC00535 642924 238244_at 0.0878 0.2923
GSE53622 LINC00535 642924 119414 0.2608 0.0390
GSE53624 LINC00535 642924 119414 0.3400 0.0042
GSE63941 LINC00535 642924 1561423_at -0.1023 0.4423
GSE77861 LINC00535 642924 1561423_at -0.0707 0.5348
SRP133303 LINC00535 642924 RNAseq -0.0629 0.7897

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00535 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00535:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00535 642924 16 1 13
GSE20123 LINC00535 642924 17 1 12
GSE43470 LINC00535 642924 21 1 21
GSE46452 LINC00535 642924 22 0 37
GSE47630 LINC00535 642924 24 0 16
GSE54993 LINC00535 642924 0 20 50
GSE54994 LINC00535 642924 34 1 18
GSE60625 LINC00535 642924 0 4 7
GSE74703 LINC00535 642924 18 1 17
GSE74704 LINC00535 642924 12 0 8
TCGA LINC00535 642924 56 2 38

Total number of gains: 220; Total number of losses: 31; Total Number of normals: 237.  

 

Somatic mutations of LINC00535:

 

Generating mutation plots.

 

Highly correlated genes for LINC00535:

 

Showing all 9 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00535KIRREL3-AS20.610601303
LINC00535A1BG0.574105303
LINC00535MAPK8IP20.562291303
LINC00535CT620.546196303
LINC00535NYAP20.543379303
LINC00535ROPN10.53507403
LINC00535CLEC11A0.521896503
LINC00535OR2J20.503769503
LINC00535LINC004450.502739603

For details and further investigation, click here