RMST

 

Full name: rhabdomyosarcoma 2 associated transcript Alias Symbol: NCRMS|NCRNA00054|LINC00054
Type: non-coding RNA Cytoband: 12q23.1
Entrez ID: 196475 HGNC ID: HGNC:29893 Ensembl Gene: ENSG00000255794 OMIM ID: 607045
Drug and gene relationship at DGIdb

 

Expression of RMST:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 RMST 196475 1562633_at 0.0687 0.7739
GSE26886 RMST 196475 229782_at 0.2100 0.0930
GSE45670 RMST 196475 1562633_at 0.0806 0.4006
GSE53622 RMST 196475 21913 -1.7231 0.0000
GSE53624 RMST 196475 21913 -1.1294 0.0000
GSE63941 RMST 196475 1562633_at -0.0969 0.4662
GSE77861 RMST 196475 1562633_at -0.0561 0.5475
TCGA RMST 196475 RNAseq -2.1513 0.0858

Upregulated datasets: 0; Downregulated datasets: 2.  

 

Survival by RMST expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of RMST:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 RMST 196475 2 2 26
GSE20123 RMST 196475 2 2 26
GSE43470 RMST 196475 3 0 40
GSE46452 RMST 196475 9 1 49
GSE47630 RMST 196475 9 1 30
GSE54993 RMST 196475 0 5 65
GSE54994 RMST 196475 4 1 48
GSE60625 RMST 196475 0 0 11
GSE74703 RMST 196475 3 0 33
GSE74704 RMST 196475 1 2 17
TCGA RMST 196475 16 10 70

Total number of gains: 49; Total number of losses: 24; Total Number of normals: 415.  

 

Somatic mutations of RMST:

 

Generating mutation plots.

 

Highly correlated genes for RMST:

 

Showing all 6 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
RMSTTMEFF20.590249403
RMSTZNF1350.540362403
RMSTNKAIN30.53031403
RMSTCHST50.529577303
RMSTCA30.527328303
RMSTCCL160.521514403

For details and further investigation, click here