SNHG4

 

Full name: small nucleolar RNA host gene 4 Alias Symbol: U19H|NCRNA00059
Type: non-coding RNA Cytoband: 5q31.2
Entrez ID: 724102 HGNC ID: HGNC:32964 Ensembl Gene: ENSG00000281398 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of SNHG4:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 SNHG4 724102 1564911_at 0.1582 0.5925
GSE26886 SNHG4 724102 1564911_at -0.0290 0.7580
GSE45670 SNHG4 724102 1564911_at 0.0942 0.3762
GSE63941 SNHG4 724102 1564911_at 1.3141 0.0211
GSE77861 SNHG4 724102 1564911_at 0.0064 0.9637
SRP007169 SNHG4 724102 RNAseq -0.9853 0.0701
SRP133303 SNHG4 724102 RNAseq -0.0671 0.7284
SRP159526 SNHG4 724102 RNAseq 0.1260 0.8608
SRP193095 SNHG4 724102 RNAseq 0.1866 0.1708
SRP219564 SNHG4 724102 RNAseq 0.2960 0.6969
TCGA SNHG4 724102 RNAseq 0.9229 0.0000

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by SNHG4 expression:

 

TCGA

 

Note: Click image to view full size file.  

Copy number change of SNHG4:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SNHG4 724102 3 11 16
GSE20123 SNHG4 724102 4 11 15
GSE43470 SNHG4 724102 4 7 32
GSE46452 SNHG4 724102 0 27 32
GSE47630 SNHG4 724102 0 21 19
GSE54993 SNHG4 724102 9 1 60
GSE54994 SNHG4 724102 2 15 36
GSE60625 SNHG4 724102 0 0 11
GSE74703 SNHG4 724102 3 5 28
GSE74704 SNHG4 724102 3 5 12

Total number of gains: 28; Total number of losses: 103; Total Number of normals: 261.  

 

Somatic mutations of SNHG4:

 

Generating mutation plots.

 

Highly correlated genes for SNHG4:

 

Showing all 6 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SNHG4PM20D20.641677303
SNHG4GTF2I0.562885303
SNHG4OTX2-AS10.562366303
SNHG4ARL6IP60.551821303
SNHG4EXOSC20.549248403
SNHG4DRG10.535028303

For details and further investigation, click here