CASC6

 

Full name: cancer susceptibility 6 Alias Symbol: 
Type: non-coding RNA Cytoband: 6q15
Entrez ID: 101929083 HGNC ID: HGNC:49076 Ensembl Gene: ENSG00000224944 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of CASC6:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CASC6 101929083 1561476_at -0.1253 0.5777
GSE26886 CASC6 101929083 1561476_at -0.0757 0.5415
GSE45670 CASC6 101929083 1561476_at 0.1052 0.1726
GSE53622 CASC6 101929083 18223 -0.0662 0.5888
GSE53624 CASC6 101929083 18223 -0.0947 0.5615
GSE63941 CASC6 101929083 1561476_at -0.1209 0.5524
GSE77861 CASC6 101929083 1561476_at -0.0722 0.4588
SRP133303 CASC6 101929083 RNAseq 0.2491 0.0664
SRP159526 CASC6 101929083 RNAseq 0.5245 0.2082
SRP193095 CASC6 101929083 RNAseq 0.3141 0.0491

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by CASC6 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of CASC6:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CASC6 101929083 1 6 23
GSE20123 CASC6 101929083 1 5 24
GSE43470 CASC6 101929083 2 2 39
GSE46452 CASC6 101929083 2 11 46
GSE47630 CASC6 101929083 8 6 26
GSE54993 CASC6 101929083 3 2 65
GSE54994 CASC6 101929083 8 8 37
GSE60625 CASC6 101929083 0 1 10
GSE74703 CASC6 101929083 2 2 32
GSE74704 CASC6 101929083 0 2 18

Total number of gains: 27; Total number of losses: 45; Total Number of normals: 320.  

 

Somatic mutations of CASC6:

 

Generating mutation plots.

 

Highly correlated genes for CASC6:

 

Showing all 8 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CASC6TAS2R380.61865303
CASC6LINC011150.606184303
CASC6OPN50.595353303
CASC6EPHA80.574675303
CASC6DMBT10.550965303
CASC6HTR1F0.530086403
CASC6SPATA6L0.526866403
CASC6OLIG30.504153403

For details and further investigation, click here