LINC00593

 

Full name: long intergenic non-protein coding RNA 593 Alias Symbol: MGC42951
Type: non-coding RNA Cytoband: 15q23
Entrez ID: 414926 HGNC ID: HGNC:32382 Ensembl Gene: ENSG00000259703 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00593:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00593 414926 1554715_at 0.0590 0.8494
GSE26886 LINC00593 414926 1554715_at 0.0120 0.9322
GSE45670 LINC00593 414926 1554715_at 0.0273 0.7698
GSE63941 LINC00593 414926 1554716_s_at 0.2047 0.1729
GSE77861 LINC00593 414926 1554715_at -0.0260 0.7920

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Copy number change of LINC00593:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00593 414926 7 1 22
GSE20123 LINC00593 414926 7 1 22
GSE43470 LINC00593 414926 4 6 33
GSE46452 LINC00593 414926 3 7 49
GSE47630 LINC00593 414926 8 10 22
GSE54993 LINC00593 414926 5 6 59
GSE54994 LINC00593 414926 5 8 40
GSE60625 LINC00593 414926 4 1 6
GSE74703 LINC00593 414926 4 3 29
GSE74704 LINC00593 414926 3 1 16
TCGA LINC00593 414926 10 15 71

Total number of gains: 60; Total number of losses: 59; Total Number of normals: 369.  

 

Somatic mutations of LINC00593:

 

Generating mutation plots.

 

Highly correlated genes for LINC00593:

 

Showing all 11 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00593LGI40.639014303
LINC00593FGF120.615612303
LINC00593TMEM1740.614919303
LINC00593DYSF0.59602303
LINC00593LCN100.589171303
LINC00593SMOC10.587097303
LINC00593PRAMEF110.568088403
LINC00593MIR670HG0.564303
LINC00593CDX10.548285403
LINC00593CA10.51489503
LINC00593RSPH6A0.507358403

For details and further investigation, click here