NPTN-IT1

 

Full name: NPTN intronic transcript 1 Alias Symbol: lncRNA-LET
Type: non-coding RNA Cytoband: 15q24.1
Entrez ID: 101241892 HGNC ID: HGNC:45091 Ensembl Gene: ENSG00000281183 OMIM ID: 615176

 

Expression of NPTN-IT1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 NPTN-IT1 101241892 228723_at -0.5219 0.2973
GSE26886 NPTN-IT1 101241892 228723_at 0.1234 0.7843
GSE45670 NPTN-IT1 101241892 228723_at -0.3897 0.0193
GSE63941 NPTN-IT1 101241892 228723_at -1.6007 0.0034
GSE77861 NPTN-IT1 101241892 228723_at -0.0117 0.9729
SRP133303 NPTN-IT1 101241892 RNAseq -0.3169 0.0768
SRP159526 NPTN-IT1 101241892 RNAseq -1.0808 0.0001
SRP193095 NPTN-IT1 101241892 RNAseq 0.0047 0.9733
SRP219564 NPTN-IT1 101241892 RNAseq -0.5320 0.4311

Upregulated datasets: 0; Downregulated datasets: 2.  

 

Copy number change of NPTN-IT1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 NPTN-IT1 101241892 8 0 22
GSE20123 NPTN-IT1 101241892 8 0 22
GSE43470 NPTN-IT1 101241892 4 6 33
GSE46452 NPTN-IT1 101241892 3 7 49
GSE47630 NPTN-IT1 101241892 8 10 22
GSE54993 NPTN-IT1 101241892 5 6 59
GSE54994 NPTN-IT1 101241892 5 8 40
GSE60625 NPTN-IT1 101241892 4 0 7
GSE74703 NPTN-IT1 101241892 4 3 29
GSE74704 NPTN-IT1 101241892 4 0 16

Total number of gains: 53; Total number of losses: 40; Total Number of normals: 299.  

 

Somatic mutations of NPTN-IT1:

 

Generating mutation plots.

 

Highly correlated genes for NPTN-IT1:

 

Showing all 9 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
NPTN-IT1ADAM330.659049303
NPTN-IT1DUSP10.6551303
NPTN-IT1RPS27L0.637734303
NPTN-IT1CCDC840.620332403
NPTN-IT1TMEM178A0.598791303
NPTN-IT1HECTD20.58918303
NPTN-IT1EBLN20.561724403
NPTN-IT1MYO1C0.560971403
NPTN-IT1GOLGA8N0.545338303

For details and further investigation, click here