SMIM17

 

Full name: small integral membrane protein 17 Alias Symbol: 
Type: protein-coding gene Cytoband: 19q13.43
Entrez ID: 147670 HGNC ID: HGNC:27114 Ensembl Gene: ENSG00000268182 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of SMIM17:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 SMIM17 147670 1557430_at 0.5026 0.4819
GSE26886 SMIM17 147670 1557430_at 0.0584 0.6806
GSE45670 SMIM17 147670 1557430_at -0.3743 0.2231
GSE63941 SMIM17 147670 1557430_at -0.9818 0.0000
GSE77861 SMIM17 147670 1557430_at -0.0180 0.7966

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Copy number change of SMIM17:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SMIM17 147670 2 4 24
GSE20123 SMIM17 147670 2 3 25
GSE43470 SMIM17 147670 2 9 32
GSE46452 SMIM17 147670 45 1 13
GSE47630 SMIM17 147670 8 6 26
GSE54993 SMIM17 147670 18 4 48
GSE54994 SMIM17 147670 5 12 36
GSE60625 SMIM17 147670 9 0 2
GSE74703 SMIM17 147670 2 6 28
GSE74704 SMIM17 147670 2 1 17
TCGA SMIM17 147670 19 16 61

Total number of gains: 114; Total number of losses: 62; Total Number of normals: 312.  

 

Somatic mutations of SMIM17:

 

Generating mutation plots.

 

Highly correlated genes for SMIM17:

 

Showing all 15 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SMIM17PDZRN40.679672303
SMIM17ZNF3220.631904303
SMIM17ANGEL20.629114303
SMIM17RBM60.612652303
SMIM17GOLGA30.610035303
SMIM17ZKSCAN70.597312303
SMIM17MRAS0.570337403
SMIM17FAM160B10.560529403
SMIM17AFAP10.548835303
SMIM17ZFP300.548711403
SMIM17KLHL150.5463303
SMIM17CD690.537961303
SMIM17TXLNG0.537201403
SMIM17ZNF1360.526217403
SMIM17PIWIL40.506998403

For details and further investigation, click here