LINC00540

 

Full name: long intergenic non-protein coding RNA 540 Alias Symbol: 
Type: non-coding RNA Cytoband: 13q12.11
Entrez ID: 100506622 HGNC ID: HGNC:43673 Ensembl Gene:  OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00540:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00540 100506622 1561367_a_at 0.2380 0.8421
GSE26886 LINC00540 100506622 1561367_a_at 0.8981 0.0486
GSE45670 LINC00540 100506622 1561367_a_at 0.2177 0.5395
GSE63941 LINC00540 100506622 1561367_a_at 0.9907 0.3061
GSE77861 LINC00540 100506622 1561367_a_at 0.0555 0.8410
SRP133303 LINC00540 100506622 RNAseq 1.8431 0.0004

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Copy number change of LINC00540:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00540 100506622 1 14 15
GSE20123 LINC00540 100506622 1 13 16
GSE43470 LINC00540 100506622 2 13 28
GSE46452 LINC00540 100506622 0 33 26
GSE47630 LINC00540 100506622 3 26 11
GSE54993 LINC00540 100506622 11 2 57
GSE54994 LINC00540 100506622 1 13 39
GSE60625 LINC00540 100506622 0 3 8
GSE74703 LINC00540 100506622 2 10 24
GSE74704 LINC00540 100506622 0 11 9

Total number of gains: 21; Total number of losses: 138; Total Number of normals: 233.  

 

Somatic mutations of LINC00540:

 

Generating mutation plots.

 

Highly correlated genes for LINC00540:

 

Showing all 9 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00540CHGB0.818044303
LINC00540NPFFR20.738025404
LINC00540CCNA10.682516303
LINC00540APH1B0.651064303
LINC00540FNDC3A0.616198303
LINC00540MGAT50.581533303
LINC00540LAMP50.561373303
LINC00540AIP0.527884403
LINC00540B4GALNT10.523788403

For details and further investigation, click here