| Full name: long intergenic non-protein coding RNA 1007 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 7q22.1 | ||
| Entrez ID: 100506527 | HGNC ID: HGNC:48973 | Ensembl Gene: ENSG00000233123 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC01007:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC01007 | 100506527 | 233135_at | -0.0958 | 0.8501 | |
| GSE26886 | LINC01007 | 100506527 | 233135_at | -0.0349 | 0.8268 | |
| GSE45670 | LINC01007 | 100506527 | 233135_at | 0.0447 | 0.7231 | |
| GSE53622 | LINC01007 | 100506527 | 9888 | 0.6094 | 0.0003 | |
| GSE53624 | LINC01007 | 100506527 | 9888 | 0.3981 | 0.0003 | |
| GSE63941 | LINC01007 | 100506527 | 233135_at | 0.0922 | 0.7172 | |
| GSE77861 | LINC01007 | 100506527 | 233135_at | -0.0943 | 0.4450 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC01007 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC01007:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC01007 | 100506527 | 14 | 0 | 16 | |
| GSE20123 | LINC01007 | 100506527 | 14 | 0 | 16 | |
| GSE43470 | LINC01007 | 100506527 | 7 | 2 | 34 | |
| GSE46452 | LINC01007 | 100506527 | 10 | 1 | 48 | |
| GSE47630 | LINC01007 | 100506527 | 7 | 3 | 30 | |
| GSE54993 | LINC01007 | 100506527 | 1 | 10 | 59 | |
| GSE54994 | LINC01007 | 100506527 | 15 | 3 | 35 | |
| GSE60625 | LINC01007 | 100506527 | 0 | 0 | 11 | |
| GSE74703 | LINC01007 | 100506527 | 7 | 1 | 28 | |
| GSE74704 | LINC01007 | 100506527 | 10 | 0 | 10 |
Total number of gains: 85; Total number of losses: 20; Total Number of normals: 287.
Somatic mutations of LINC01007:
Generating mutation plots.
Highly correlated genes for LINC01007:
Showing top 20/144 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC01007 | TMCC1-AS1 | 0.675168 | 3 | 0 | 3 |
| LINC01007 | DLGAP1-AS3 | 0.668931 | 3 | 0 | 3 |
| LINC01007 | C8orf74 | 0.665166 | 3 | 0 | 3 |
| LINC01007 | BFSP2-AS1 | 0.658855 | 3 | 0 | 3 |
| LINC01007 | MEDAG | 0.654505 | 3 | 0 | 3 |
| LINC01007 | SYT6 | 0.647465 | 3 | 0 | 3 |
| LINC01007 | LINC00662 | 0.635587 | 3 | 0 | 3 |
| LINC01007 | ATCAY | 0.63521 | 4 | 0 | 4 |
| LINC01007 | PROCA1 | 0.635063 | 3 | 0 | 3 |
| LINC01007 | LINC00280 | 0.633086 | 3 | 0 | 3 |
| LINC01007 | LINC01352 | 0.629374 | 4 | 0 | 3 |
| LINC01007 | NFIA-AS2 | 0.629216 | 4 | 0 | 4 |
| LINC01007 | ZNF213-AS1 | 0.628461 | 3 | 0 | 3 |
| LINC01007 | OR5H1 | 0.625852 | 4 | 0 | 3 |
| LINC01007 | LINC00917 | 0.624768 | 3 | 0 | 3 |
| LINC01007 | WFDC6 | 0.621182 | 3 | 0 | 3 |
| LINC01007 | OR10J1 | 0.617697 | 3 | 0 | 3 |
| LINC01007 | GNG13 | 0.612872 | 4 | 0 | 3 |
| LINC01007 | TMEM235 | 0.611367 | 5 | 0 | 4 |
| LINC01007 | DNAH9 | 0.609148 | 3 | 0 | 3 |
For details and further investigation, click here
