| Full name: small nucleolar RNA host gene 18 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 5p15.31 | ||
| Entrez ID: 100505806 | HGNC ID: HGNC:49007 | Ensembl Gene: ENSG00000250786 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of SNHG18:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNHG18 | 100505806 | 227655_at | -0.1793 | 0.7962 | |
| GSE26886 | SNHG18 | 100505806 | 227655_at | -0.4496 | 0.1352 | |
| GSE45670 | SNHG18 | 100505806 | 227655_at | -0.3679 | 0.1848 | |
| GSE53622 | SNHG18 | 100505806 | 47209 | -0.3974 | 0.0279 | |
| GSE53624 | SNHG18 | 100505806 | 47209 | -0.4517 | 0.0013 | |
| GSE63941 | SNHG18 | 100505806 | 227655_at | -1.3236 | 0.2239 | |
| GSE77861 | SNHG18 | 100505806 | 227655_at | -0.4554 | 0.0273 | |
| SRP007169 | SNHG18 | 100505806 | RNAseq | -0.3986 | 0.5956 | |
| SRP064894 | SNHG18 | 100505806 | RNAseq | -0.8251 | 0.0240 | |
| SRP133303 | SNHG18 | 100505806 | RNAseq | -0.6687 | 0.0205 | |
| SRP159526 | SNHG18 | 100505806 | RNAseq | -1.6320 | 0.0003 | |
| SRP193095 | SNHG18 | 100505806 | RNAseq | -1.1470 | 0.0000 | |
| SRP219564 | SNHG18 | 100505806 | RNAseq | -0.9261 | 0.0175 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by SNHG18 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SNHG18:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNHG18 | 100505806 | 12 | 0 | 18 | |
| GSE20123 | SNHG18 | 100505806 | 12 | 0 | 18 | |
| GSE43470 | SNHG18 | 100505806 | 17 | 0 | 26 | |
| GSE46452 | SNHG18 | 100505806 | 6 | 22 | 31 | |
| GSE47630 | SNHG18 | 100505806 | 6 | 11 | 23 | |
| GSE54993 | SNHG18 | 100505806 | 5 | 5 | 60 | |
| GSE54994 | SNHG18 | 100505806 | 29 | 1 | 23 | |
| GSE60625 | SNHG18 | 100505806 | 0 | 0 | 11 | |
| GSE74703 | SNHG18 | 100505806 | 13 | 0 | 23 | |
| GSE74704 | SNHG18 | 100505806 | 11 | 0 | 9 |
Total number of gains: 111; Total number of losses: 39; Total Number of normals: 242.
Somatic mutations of SNHG18:
Generating mutation plots.
Highly correlated genes for SNHG18:
Showing all 11 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNHG18 | ERMP1 | 0.645242 | 3 | 0 | 3 |
| SNHG18 | SEMA5A | 0.631126 | 6 | 0 | 5 |
| SNHG18 | TCN1 | 0.610173 | 3 | 0 | 3 |
| SNHG18 | PRKCH | 0.605573 | 3 | 0 | 3 |
| SNHG18 | MECOM | 0.582913 | 5 | 0 | 4 |
| SNHG18 | B3GALNT1 | 0.563991 | 3 | 0 | 3 |
| SNHG18 | TRERF1 | 0.556064 | 4 | 0 | 4 |
| SNHG18 | ODAM | 0.54693 | 3 | 0 | 3 |
| SNHG18 | ABHD17C | 0.540234 | 3 | 0 | 3 |
| SNHG18 | ADH1C | 0.525972 | 5 | 0 | 3 |
| SNHG18 | CARD6 | 0.518342 | 4 | 0 | 3 |
For details and further investigation, click here
