BANCR

 

Full name: BRAF-activated non-protein coding RNA Alias Symbol: LINC00586
Type: non-coding RNA Cytoband: 9q21.11-q21.12
Entrez ID: 100885775 HGNC ID: HGNC:43877 Ensembl Gene: ENSG00000278910 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of BANCR:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 BANCR 100885775 239239_at 0.1633 0.3989
GSE26886 BANCR 100885775 239239_at 0.1645 0.3662
GSE45670 BANCR 100885775 239239_at -0.0245 0.8758
GSE53622 BANCR 100885775 59420 0.3577 0.0358
GSE53624 BANCR 100885775 59420 0.7060 0.0000
GSE63941 BANCR 100885775 239239_at 0.0515 0.7245
GSE77861 BANCR 100885775 239239_at -0.1484 0.1567

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by BANCR expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of BANCR:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 BANCR 100885775 6 10 14
GSE20123 BANCR 100885775 6 10 14
GSE43470 BANCR 100885775 6 5 32
GSE46452 BANCR 100885775 7 14 38
GSE47630 BANCR 100885775 1 19 20
GSE54993 BANCR 100885775 5 1 64
GSE54994 BANCR 100885775 4 13 36
GSE60625 BANCR 100885775 0 0 11
GSE74703 BANCR 100885775 5 4 27
GSE74704 BANCR 100885775 3 7 10

Total number of gains: 43; Total number of losses: 83; Total Number of normals: 266.  

 

Somatic mutations of BANCR:

 

Generating mutation plots.

 

Highly correlated genes for BANCR:

 

Showing all 13 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
BANCRCAPN130.665276303
BANCRGOLGA6L60.657617303
BANCRCPXM10.629609303
BANCRLINC002050.593878303
BANCRATP1B40.590142303
BANCRTTBK10.575653303
BANCRADAM200.574147403
BANCRHBQ10.568796403
BANCRZBED3-AS10.559399403
BANCRLINC009730.545175403
BANCRNFATC40.543991303
BANCRACE0.528941303
BANCREPHB20.523092403

For details and further investigation, click here