LINC01222

 

Full name: long intergenic non-protein coding RNA 1222 Alias Symbol: TCONS_00000112
Type: non-coding RNA Cytoband: 1q32.1
Entrez ID: 102800316 HGNC ID: HGNC:49672 Ensembl Gene: ENSG00000233410 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC01222:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC01222 102800316 1561411_at 0.1102 0.6037
GSE26886 LINC01222 102800316 1561411_at -0.1220 0.1820
GSE45670 LINC01222 102800316 1561411_at -0.0184 0.8371
GSE53622 LINC01222 102800316 61746 0.4175 0.0000
GSE53624 LINC01222 102800316 61746 0.0725 0.2943
GSE63941 LINC01222 102800316 1561411_at 0.0923 0.5530
GSE77861 LINC01222 102800316 1561411_at -0.1169 0.3384

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC01222 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC01222:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC01222 102800316 6 0 24
GSE20123 LINC01222 102800316 6 0 24
GSE43470 LINC01222 102800316 6 0 37
GSE46452 LINC01222 102800316 3 1 55
GSE47630 LINC01222 102800316 14 0 26
GSE54993 LINC01222 102800316 0 6 64
GSE54994 LINC01222 102800316 15 0 38
GSE60625 LINC01222 102800316 0 0 11
GSE74703 LINC01222 102800316 6 0 30
GSE74704 LINC01222 102800316 2 0 18

Total number of gains: 58; Total number of losses: 7; Total Number of normals: 327.  

 

Somatic mutations of LINC01222:

 

Generating mutation plots.

 

Highly correlated genes for LINC01222:

 

Showing all 12 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC01222PRTG0.630477303
LINC01222LRP20.600595303
LINC01222MAP3K190.583101303
LINC01222LINC002260.580418403
LINC01222CYP4Z10.565364303
LINC01222KLK30.53973503
LINC01222COL9A20.536054504
LINC01222VWA3A0.535708403
LINC01222LCE1E0.534423403
LINC01222OR51B40.525793403
LINC01222KCNS10.519927403
LINC01222SETD50.510953403

For details and further investigation, click here