| Full name: NPHP3 antisense RNA 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 3q22.1 | ||
| Entrez ID: 348808 | HGNC ID: HGNC:24129 | Ensembl Gene: ENSG00000248724 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of NPHP3-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | NPHP3-AS1 | 348808 | 1556887_at | -0.0969 | 0.6510 | |
| GSE26886 | NPHP3-AS1 | 348808 | 1556887_at | -0.1056 | 0.3080 | |
| GSE45670 | NPHP3-AS1 | 348808 | 1556887_at | 0.1622 | 0.1600 | |
| GSE53622 | NPHP3-AS1 | 348808 | 93521 | -0.1249 | 0.3221 | |
| GSE53624 | NPHP3-AS1 | 348808 | 93521 | -0.1432 | 0.1074 | |
| GSE63941 | NPHP3-AS1 | 348808 | 1556887_at | 0.0338 | 0.8524 | |
| GSE77861 | NPHP3-AS1 | 348808 | 1556887_at | -0.0717 | 0.4528 | |
| SRP133303 | NPHP3-AS1 | 348808 | RNAseq | 0.7073 | 0.0423 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by NPHP3-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of NPHP3-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | NPHP3-AS1 | 348808 | 16 | 0 | 14 | |
| GSE20123 | NPHP3-AS1 | 348808 | 16 | 0 | 14 | |
| GSE43470 | NPHP3-AS1 | 348808 | 21 | 0 | 22 | |
| GSE46452 | NPHP3-AS1 | 348808 | 15 | 4 | 40 | |
| GSE47630 | NPHP3-AS1 | 348808 | 18 | 3 | 19 | |
| GSE54993 | NPHP3-AS1 | 348808 | 2 | 8 | 60 | |
| GSE54994 | NPHP3-AS1 | 348808 | 32 | 3 | 18 | |
| GSE60625 | NPHP3-AS1 | 348808 | 0 | 6 | 5 | |
| GSE74703 | NPHP3-AS1 | 348808 | 18 | 0 | 18 | |
| GSE74704 | NPHP3-AS1 | 348808 | 11 | 0 | 9 |
Total number of gains: 149; Total number of losses: 24; Total Number of normals: 219.
Somatic mutations of NPHP3-AS1:
Generating mutation plots.
Highly correlated genes for NPHP3-AS1:
Showing top 20/44 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| NPHP3-AS1 | MATN1 | 0.640419 | 3 | 0 | 3 |
| NPHP3-AS1 | ARMC4 | 0.631917 | 3 | 0 | 3 |
| NPHP3-AS1 | ALLC | 0.626331 | 3 | 0 | 3 |
| NPHP3-AS1 | LRRC43 | 0.622997 | 4 | 0 | 4 |
| NPHP3-AS1 | CNBD2 | 0.61485 | 3 | 0 | 3 |
| NPHP3-AS1 | MAGI1-IT1 | 0.613046 | 3 | 0 | 3 |
| NPHP3-AS1 | SULT1B1 | 0.601408 | 3 | 0 | 3 |
| NPHP3-AS1 | CCDC157 | 0.593462 | 4 | 0 | 4 |
| NPHP3-AS1 | VGLL2 | 0.587276 | 4 | 0 | 3 |
| NPHP3-AS1 | PAPPA2 | 0.586412 | 4 | 0 | 4 |
| NPHP3-AS1 | EGFLAM-AS2 | 0.585785 | 3 | 0 | 3 |
| NPHP3-AS1 | SMIM24 | 0.582543 | 4 | 0 | 3 |
| NPHP3-AS1 | SYT2 | 0.581799 | 3 | 0 | 3 |
| NPHP3-AS1 | CLVS1 | 0.580914 | 3 | 0 | 3 |
| NPHP3-AS1 | BPIFA2 | 0.577959 | 4 | 0 | 3 |
| NPHP3-AS1 | PDE6G | 0.57795 | 3 | 0 | 3 |
| NPHP3-AS1 | ZNF619 | 0.573047 | 4 | 0 | 3 |
| NPHP3-AS1 | ODF4 | 0.571178 | 3 | 0 | 3 |
| NPHP3-AS1 | LINC01398 | 0.569914 | 3 | 0 | 3 |
| NPHP3-AS1 | ANKUB1 | 0.566991 | 4 | 0 | 3 |
For details and further investigation, click here
