SLC10A4

 

Full name: solute carrier family 10 member 4 Alias Symbol: MGC29802
Type: protein-coding gene Cytoband: 4p11
Entrez ID: 201780 HGNC ID: HGNC:22980 Ensembl Gene: ENSG00000145248 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of SLC10A4:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 SLC10A4 201780 239913_at 0.3789 0.5315
GSE26886 SLC10A4 201780 239913_at 0.5765 0.0003
GSE45670 SLC10A4 201780 239913_at 0.2855 0.3071
GSE53622 SLC10A4 201780 61861 0.4952 0.0619
GSE53624 SLC10A4 201780 61861 1.4515 0.0000
GSE63941 SLC10A4 201780 239913_at 0.7395 0.4942
GSE77861 SLC10A4 201780 239913_at -0.0334 0.7495
TCGA SLC10A4 201780 RNAseq -0.1106 0.8373

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by SLC10A4 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of SLC10A4:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SLC10A4 201780 1 15 14
GSE20123 SLC10A4 201780 1 15 14
GSE43470 SLC10A4 201780 0 13 30
GSE46452 SLC10A4 201780 1 37 21
GSE47630 SLC10A4 201780 1 18 21
GSE54993 SLC10A4 201780 7 0 63
GSE54994 SLC10A4 201780 4 9 40
GSE60625 SLC10A4 201780 0 0 11
GSE74703 SLC10A4 201780 0 11 25
GSE74704 SLC10A4 201780 0 9 11
TCGA SLC10A4 201780 21 34 41

Total number of gains: 36; Total number of losses: 161; Total Number of normals: 291.  

 

Somatic mutations of SLC10A4:

 

Generating mutation plots.

 

Highly correlated genes for SLC10A4:

 

Showing all 13 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SLC10A4IGFBPL10.734917303
SLC10A4YDJC0.697248303
SLC10A4NKX2-20.661969303
SLC10A4DROSHA0.639634303
SLC10A4ZNF6180.61934303
SLC10A4NUP1600.609768303
SLC10A4GYG20.595726403
SLC10A4TTC330.57721303
SLC10A4SKP20.558204303
SLC10A4FBRSL10.556132403
SLC10A4HMGB30.551056403
SLC10A4ELOVL20.539199503
SLC10A4NR2E10.504298403

For details and further investigation, click here