| Full name: chromosome 3 open reading frame 56 | Alias Symbol: FLJ40141 | ||
| Type: protein-coding gene | Cytoband: 3q21.3 | ||
| Entrez ID: 285311 | HGNC ID: HGNC:32481 | Ensembl Gene: ENSG00000214324 | OMIM ID: |
Expression of C3orf56:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | C3orf56 | 285311 | 1562762_at | -0.0330 | 0.8901 | |
| GSE26886 | C3orf56 | 285311 | 1562762_at | 0.1498 | 0.1869 | |
| GSE45670 | C3orf56 | 285311 | 1562762_at | 0.0126 | 0.8880 | |
| GSE53622 | C3orf56 | 285311 | 10181 | 0.5244 | 0.0000 | |
| GSE53624 | C3orf56 | 285311 | 10181 | 0.4868 | 0.0035 | |
| GSE63941 | C3orf56 | 285311 | 1562762_at | 0.1054 | 0.3705 | |
| GSE77861 | C3orf56 | 285311 | 1562762_at | -0.0369 | 0.6758 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by C3orf56 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of C3orf56:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | C3orf56 | 285311 | 17 | 0 | 13 | |
| GSE20123 | C3orf56 | 285311 | 17 | 0 | 13 | |
| GSE43470 | C3orf56 | 285311 | 19 | 0 | 24 | |
| GSE46452 | C3orf56 | 285311 | 14 | 5 | 40 | |
| GSE47630 | C3orf56 | 285311 | 17 | 4 | 19 | |
| GSE54993 | C3orf56 | 285311 | 2 | 7 | 61 | |
| GSE54994 | C3orf56 | 285311 | 31 | 3 | 19 | |
| GSE60625 | C3orf56 | 285311 | 0 | 6 | 5 | |
| GSE74703 | C3orf56 | 285311 | 17 | 0 | 19 | |
| GSE74704 | C3orf56 | 285311 | 13 | 0 | 7 | |
| TCGA | C3orf56 | 285311 | 55 | 6 | 35 |
Total number of gains: 202; Total number of losses: 31; Total Number of normals: 255.
Somatic mutations of C3orf56:
Generating mutation plots.
Highly correlated genes for C3orf56:
Showing top 20/64 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| C3orf56 | SYPL2 | 0.707293 | 3 | 0 | 3 |
| C3orf56 | LINC01352 | 0.694169 | 3 | 0 | 3 |
| C3orf56 | ZNF527 | 0.672003 | 3 | 0 | 3 |
| C3orf56 | CDK15 | 0.638876 | 3 | 0 | 3 |
| C3orf56 | EFCAB5 | 0.636152 | 4 | 0 | 3 |
| C3orf56 | LINC01115 | 0.632543 | 3 | 0 | 3 |
| C3orf56 | LHX3 | 0.63175 | 4 | 0 | 3 |
| C3orf56 | ARMCX4 | 0.628264 | 3 | 0 | 3 |
| C3orf56 | OR2T33 | 0.627974 | 3 | 0 | 3 |
| C3orf56 | PPP5D1 | 0.620809 | 3 | 0 | 3 |
| C3orf56 | GSX1 | 0.619746 | 4 | 0 | 3 |
| C3orf56 | ZNF132 | 0.615304 | 3 | 0 | 3 |
| C3orf56 | CC2D2B | 0.613065 | 3 | 0 | 3 |
| C3orf56 | SYCN | 0.611453 | 5 | 0 | 4 |
| C3orf56 | DLGAP1-AS1 | 0.611304 | 4 | 0 | 4 |
| C3orf56 | ZFHX4-AS1 | 0.610706 | 3 | 0 | 3 |
| C3orf56 | MPPED1 | 0.607622 | 3 | 0 | 3 |
| C3orf56 | MXD3 | 0.602239 | 3 | 0 | 3 |
| C3orf56 | CCDC154 | 0.598286 | 4 | 0 | 3 |
| C3orf56 | KRTAP12-2 | 0.598174 | 3 | 0 | 3 |
For details and further investigation, click here
