| Full name: clarin 1 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 3q25.1 | ||
| Entrez ID: 7401 | HGNC ID: HGNC:12605 | Ensembl Gene: ENSG00000163646 | OMIM ID: 606397 |
| Drug and gene relationship at DGIdb | |||
Expression of CLRN1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CLRN1 | 7401 | 1555695_a_at | -0.1019 | 0.7114 | |
| GSE26886 | CLRN1 | 7401 | 1555695_a_at | -0.2034 | 0.0429 | |
| GSE45670 | CLRN1 | 7401 | 1555695_a_at | -0.0628 | 0.4977 | |
| GSE53622 | CLRN1 | 7401 | 76388 | 0.3208 | 0.0983 | |
| GSE53624 | CLRN1 | 7401 | 76388 | 0.4663 | 0.0000 | |
| GSE63941 | CLRN1 | 7401 | 1555695_a_at | 0.1174 | 0.3303 | |
| GSE77861 | CLRN1 | 7401 | 1555695_a_at | -0.0856 | 0.5590 | |
| TCGA | CLRN1 | 7401 | RNAseq | 1.0342 | 0.5641 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by CLRN1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CLRN1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CLRN1 | 7401 | 21 | 0 | 9 | |
| GSE20123 | CLRN1 | 7401 | 21 | 0 | 9 | |
| GSE43470 | CLRN1 | 7401 | 23 | 0 | 20 | |
| GSE46452 | CLRN1 | 7401 | 18 | 2 | 39 | |
| GSE47630 | CLRN1 | 7401 | 19 | 3 | 18 | |
| GSE54993 | CLRN1 | 7401 | 1 | 10 | 59 | |
| GSE54994 | CLRN1 | 7401 | 37 | 1 | 15 | |
| GSE60625 | CLRN1 | 7401 | 0 | 6 | 5 | |
| GSE74703 | CLRN1 | 7401 | 20 | 0 | 16 | |
| GSE74704 | CLRN1 | 7401 | 14 | 0 | 6 | |
| TCGA | CLRN1 | 7401 | 72 | 1 | 23 |
Total number of gains: 246; Total number of losses: 23; Total Number of normals: 219.
Somatic mutations of CLRN1:
Generating mutation plots.
Highly correlated genes for CLRN1:
Showing top 20/52 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CLRN1 | OSM | 0.713206 | 3 | 0 | 3 |
| CLRN1 | OR10H3 | 0.660151 | 3 | 0 | 3 |
| CLRN1 | CACNG6 | 0.623666 | 5 | 0 | 4 |
| CLRN1 | OR51B2 | 0.620217 | 4 | 0 | 3 |
| CLRN1 | SAMD15 | 0.61131 | 4 | 0 | 3 |
| CLRN1 | PCGEM1 | 0.610854 | 4 | 0 | 4 |
| CLRN1 | ASB16 | 0.604672 | 4 | 0 | 3 |
| CLRN1 | ADAD1 | 0.589872 | 4 | 0 | 3 |
| CLRN1 | OR51M1 | 0.585643 | 4 | 0 | 3 |
| CLRN1 | SOX10 | 0.583981 | 4 | 0 | 3 |
| CLRN1 | PCA3 | 0.582781 | 3 | 0 | 3 |
| CLRN1 | PRSS33 | 0.570083 | 4 | 0 | 4 |
| CLRN1 | MIR4755 | 0.569086 | 4 | 0 | 3 |
| CLRN1 | LINC00705 | 0.56708 | 4 | 0 | 3 |
| CLRN1 | KRTAP13-1 | 0.565959 | 4 | 0 | 3 |
| CLRN1 | ANHX | 0.564624 | 4 | 0 | 3 |
| CLRN1 | CD300LB | 0.564168 | 4 | 0 | 3 |
| CLRN1 | DGCR12 | 0.562788 | 4 | 0 | 3 |
| CLRN1 | APOBEC2 | 0.56194 | 4 | 0 | 3 |
| CLRN1 | HOXB-AS3 | 0.557582 | 3 | 0 | 3 |
For details and further investigation, click here
